Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00024 ATGGAAAACTTGAACCATGCTGAATCTTCTTCTTCTTCTTCCAATCAAGACCTTCGAAGACGCATCAAATATCTTCCCCAACCTCAACTCGTTGATGTTCTCTGTAATATAGCCTCCCAACATCCTTCAATCGCACAAGAAATTGAAGCTCTTACAACCGTGACTCCCCATCGAACGCTTTTCGTTCGTAACTTGTCCTCCAGAACAAATTCACGACTCTTACGTCGTGCATTTCAAAGGTATGGAGAAATTGAGGAAGCGTTTGTGGTTTGTGATAGAGTCACAAAAATATCCAAGAACTATGGATTTGTCACTTATAAAGATGTTAAATCAGTTCAGGATGCGTTGATTCAACCTAGCAAAGATATTGATGGATCAATGGCTGTATGTGATGTAGCTGATGAGCGCCACAGGAGAAATAATATTAGTAGTGATCCTGATTTGTACCTCTTTAGGAAGCTTTATGTTGGACATTTAGCAGCAGGAGTAACAAGTGAAAATCTGCGCAGCGATTTTCAGATTCATGGTGAAATAGAAGCAGCAGTTGTAATGAGAAATGCTAGATATGGATTCGTTACGTACAAGACAGAAGAGGCTGCAAAGAAGGCTATAGATTACAACACTCTTCATCCAACATTTGCCGAAGGAAAAAAAAGGATTGTGAAATATGCTAATCGCCGGAGGGGTCCACGAGCTTTAGGTAGGACTCGAAGCCCAGAAAACGAGCAGCCTGAAGATGATTATGTTGATTCTCCAGTACCATATGCTCCACCTCCTGCACATTCTCCTTATGAGACATATGGTGTTTCCTATCCTCATATTTCTGCAATGACAGACCAATTTGGGAACCCGTATTACTATGACTATTCCTATCCCTACCAGTGA 885 0.4113 MENLNHAESSSSSSNQDLRRRIKYLPQPQLVDVLCNIASQHPSIAQEIEALTTVTPHRTLFVRNLSSRTNSRLLRRAFQRYGEIEEAFVVCDRVTKISKNYGFVTYKDVKSVQDALIQPSKDIDGSMAVCDVADERHRRNNISSDPDLYLFRKLYVGHLAAGVTSENLRSDFQIHGEIEAAVVMRNARYGFVTYKTEEAAKKAIDYNTLHPTFAEGKKRIVKYANRRRGPRALGRTRSPENEQPEDDYVDSPVPYAPPPAHSPYETYGVSYPHISAMTDQFGNPYYYDYSYPYQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00024 294 SMART rrm1_1 153 222 IPR000504 GO:0003723
Vivi16g00024 294 SMART rrm1_1 59 131 IPR000504 GO:0003723
Vivi16g00024 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 226 IPR000504 GO:0003723
Vivi16g00024 294 MobiDBLite consensus disorder prediction 224 261 - -
Vivi16g00024 294 SUPERFAMILY RNA-binding domain, RBD 152 235 IPR035979 GO:0003676
Vivi16g00024 294 Gene3D - 146 251 IPR012677 -
Vivi16g00024 294 SUPERFAMILY RNA-binding domain, RBD 55 140 IPR035979 GO:0003676
Vivi16g00024 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 145 IPR000504 GO:0003723
Vivi16g00024 294 Gene3D - 5 145 IPR012677 -
Vivi16g00024 294 PANTHER GEO13361P1-RELATED 52 138 - -
Vivi16g00024 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 117 IPR000504 GO:0003723
Vivi16g00024 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 207 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi16g00024 16 136 C2H2 Transcription Factor Family AT2G19380 31.967 5.93e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00024 K12741 - gmx:100776344 184.882