Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00023 ATGTCGAATATTCCTTCATATGACATCTTTGTTGACATATTGCTTCAGTTGAAGTTAATAGAACATCTTATCAAACATGTTCCCATAAGGATTAGTGGTAGTTCTATCTCTATGAGGAGTTCTGAGGATGATGGAAATGAATATAGGGGTCCTTGGGATGCTGAGGTCTTGGAGGAGCTCGTGGAGGAAGACGGGGACACTAACTCATTTATGCTTGATATTAGGAAAGTCGGTCGTGGTTTCACTTTCTCTGAAGTGCCTATGGCATTTGAAGAGCATGGAGAAATTGAGGAAGCGTATGTGGTTCGTCATAGAGACACAAGAATATCCAAGAACTATGGATTTGTCACTTATAAAGATGTTAAATCAGTTCAAGATGCGTTGATTCGACCTAGGAAAGTTATTGATGGATCAATGGCTGTATGTGATGTAGCTGATGGGAGCCACGGGAAAACTAATACTAGTAGTGATCCTGATTTACCCCTCGGGAGGAAGCTTTATATTGGAAATTTAGCAGCAGGAGTAACAACCGAAAATCTGCGCAGCGATTTTCAGATGCATGGTGAAATAGTAGAAGCAGTTGCAATGAAAACAGCTAGATTTGGATTCGTTACATACATGACAGCAGAGGCTGCAAAGAAGGCCATAGATTACAACACTCTTCATCCAACATTTGCTGAAGGAAGAAAAAGGATTGTGAAATATGCTAATCCTCCGAGGGGTCGGCGAGTTTCACGTAGGAATCCAAATCCAGAATACCAGCAGTTTGAAGATGATTATGTTGATTCTCATTCTGCTTATGAAACATATGGTGTTTCCTATCCTCGTCTTTCTGCAATGACAGACCAATTTGGGACCCGTTATTACTATGACTATTCCTATCCCTACCAGTGA 894 0.4083 MSNIPSYDIFVDILLQLKLIEHLIKHVPIRISGSSISMRSSEDDGNEYRGPWDAEVLEELVEEDGDTNSFMLDIRKVGRGFTFSEVPMAFEEHGEIEEAYVVRHRDTRISKNYGFVTYKDVKSVQDALIRPRKVIDGSMAVCDVADGSHGKTNTSSDPDLPLGRKLYIGNLAAGVTTENLRSDFQMHGEIVEAVAMKTARFGFVTYMTAEAAKKAIDYNTLHPTFAEGRKRIVKYANPPRGRRVSRRNPNPEYQQFEDDYVDSHSAYETYGVSYPRLSAMTDQFGTRYYYDYSYPYQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00023 297 SUPERFAMILY RNA-binding domain, RBD 154 249 IPR035979 GO:0003676
Vivi16g00023 297 PANTHER GEO13361P1-RELATED 159 255 - -
Vivi16g00023 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 157 IPR000504 GO:0003723
Vivi16g00023 297 SMART rrm1_1 71 143 IPR000504 GO:0003723
Vivi16g00023 297 SMART rrm1_1 165 234 IPR000504 GO:0003723
Vivi16g00023 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 219 IPR000504 GO:0003723
Vivi16g00023 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 129 IPR000504 GO:0003723
Vivi16g00023 297 Gene3D - 152 261 IPR012677 -
Vivi16g00023 297 Gene3D - 64 151 IPR012677 -
Vivi16g00023 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 238 IPR000504 GO:0003723
Vivi16g00023 297 SUPERFAMILY RNA-binding domain, RBD 72 150 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi16g00023 74 162 C2H2 Transcription Factor Family AT2G19380 38.202 3.28e-11 62.0