Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00015 ATGGATGGCCGCAAAAGAGGAAGACCTGAACATGGATTTAACACCAATGGTGGATTCAAGAAATCCAGACAAGAAATGCAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGTTGCCCATTTGGTGAGACATGCCATTTCTTGCACTATGTTCCTGGTGGTTTTAATGCTGTTGCCCATATGATGAATCTAACACCCGCAGCACCTCCTGCACCAAGAAATGTTGCAGCCCCACCACATGCTCATGCACACAATGGATCTGCACCATCTGCTGTTAAAAGTCGCATATGCAACAGATTTAACACTGCTGAAGGTTGCAAATTCGGCGACAAATGTCATTTCGCTCATGGTGAATGGGAACTTGGAAAGCCTGTAGCTCTATCATTTGATGATCACCGTCACGCGGGACCCCCCAATGTAGGTCGTATGGGTGGTCACCGGATGGAGCCTCCTCCTGGTCCAACTACTAGCTTTGGTGCCACTGCCACTGCCAAGATCAGTGTGGAAGCTTCCATGGCTGGAGCAATCATTGGTAAGGGTGGTGTGAACTCAAAACAGATCTGTCGCCAAACTGGAGCTAAGCTTTCGATTCGAGAGCATGAATCTGATCAAAATCTTAAGAACATTGAACTTGAGGGAACTTTTGAACAAATTAAGGATGCAAGTAACATGGTGAAGGATTTACTGATGACCCTGAAAATGTCTGCACCACCTAAAACAACCCAAGGTCCTCCTGGTGCCCCTGGCCATCATCATGGAAATCATGGAAGCAACTTTAAGACAAAATTGTGTGAGAATTTTACAAAAGGATCTTGTACTTTTGGAGAAAGGTGTCATTTTGCACATGGAGCGACTGAAATGCGGAAATAA 900 0.4533 MDGRKRGRPEHGFNTNGGFKKSRQEMQSLSTGVGSKSKPCTKFFSTSGCPFGETCHFLHYVPGGFNAVAHMMNLTPAAPPAPRNVAAPPHAHAHNGSAPSAVKSRICNRFNTAEGCKFGDKCHFAHGEWELGKPVALSFDDHRHAGPPNVGRMGGHRMEPPPGPTTSFGATATAKISVEASMAGAIIGKGGVNSKQICRQTGAKLSIREHESDQNLKNIELEGTFEQIKDASNMVKDLLMTLKMSAPPKTTQGPPGAPGHHHGNHGSNFKTKLCENFTKGSCTFGERCHFAHGATEMRK 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00015 299 Gene3D - 265 299 - -
Vivi16g00015 299 Gene3D - 95 133 - -
Vivi16g00015 299 FunFam Zinc finger CCCH domain-containing protein 263 299 - -
Vivi16g00015 299 SUPERFAMILY CCCH zinc finger 268 298 IPR036855 GO:0046872
Vivi16g00015 299 MobiDBLite consensus disorder prediction 17 33 - -
Vivi16g00015 299 FunFam Zinc finger CCCH domain-containing protein 96 133 - -
Vivi16g00015 299 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Vivi16g00015 299 Pfam KH domain 174 236 IPR004088 GO:0003723
Vivi16g00015 299 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 155 IPR045877 GO:0003729
Vivi16g00015 299 ProSiteProfiles Zinc finger C3H1-type profile. 101 129 IPR000571 GO:0046872
Vivi16g00015 299 SUPERFAMILY CCCH zinc finger 100 132 IPR036855 GO:0046872
Vivi16g00015 299 ProSiteProfiles Zinc finger C3H1-type profile. 268 295 IPR000571 GO:0046872
Vivi16g00015 299 MobiDBLite consensus disorder prediction 245 264 - -
Vivi16g00015 299 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Vivi16g00015 299 ProSiteProfiles Type-1 KH domain profile. 171 235 - -
Vivi16g00015 299 SMART kh_6 170 240 IPR004087 GO:0003676
Vivi16g00015 299 CDD KH-I_AtC3H36_like 174 239 - -
Vivi16g00015 299 MobiDBLite consensus disorder prediction 1 33 - -
Vivi16g00015 299 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 242 IPR036612 GO:0003723
Vivi16g00015 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 128 IPR000571 GO:0046872
Vivi16g00015 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 293 IPR000571 GO:0046872
Vivi16g00015 299 Gene3D K Homology domain, type 1 167 264 IPR036612 GO:0003723
Vivi16g00015 299 SUPERFAMILY CCCH zinc finger 35 61 IPR036855 GO:0046872
Vivi16g00015 299 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Vivi16g00015 299 SMART c3hfinal6 103 128 IPR000571 GO:0046872
Vivi16g00015 299 SMART c3hfinal6 34 61 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi16g00015 KH_1 1.4e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00015 - - gmx:100803981 472.241