Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00006 ATGGAGAGAGTCCAATGCTCCTACGAATCTCAGGATAAAACGTTCGAAATCGGGAAAGAGATGTATCGTGGACAGCAATACAGTCAAATTTACTATGCTCGTCTTCACTTGATGAGAACTCTACTGTATTCTCTTGTTTCCCAGTGGAAACCTAATTCTCCTGTGTGCACGGTGTTGGAACTGAAAGAGGGCAAGGAGTGTGTTGTTGTTGGGACACTGTTTAAAAACATGAAGTTGAAACCTTGCATACTTGATGAGTATTCTAAAGAGAGATCGGTTGTCCCACTTGTCAAGCCGCATAACTTTGTGGACAAAAATGATTATCTTGTTTTGGAAGATGAAAGTGGAAGAGTTAAGCTTAGTGGGAATGTTATTGTTCCATCTGTCTATGTAACAGGAATTGTGGTTGCTATACATGGTAAAGAGACCGGAGCAGGTGATTTTTTGGTTCAGGAAGTTCTAGAAGCTGGCTTACCACCGCAGATAGAATTCCCCATTAAATCAAGGGAAGACAGATATGTTCTTTTTGTGTCAGGATTAAGTATTGGCAGCAGCAAGTCTAACCCTCTTCAATTTCAGCTTCTAGTTGATCATATTACTGGCCATTTAGGAGATGAGAAGGAGCAAAGTATTGCGTCGCAAATTGTTCATGTAGTCATTGCTGGAAATTCTGTTGAGATAGCTCGTGGACTTCTTAATGGACAGAATTTGGCTTCAAAAGATCTTTCGAAGATGGCAGAACCAGTAAAGGAGCTAGATATTCTGTTGAATCAGATTGCTGCGGGTTTGCCATTGGATATCATGCCAGGACCCTGTGACCCTGCTAATTTCTCATTACCACAACAGGCATTGCATAGATGCCTTTTCCCCGGGTCATCAGTTTACAACACTTTTAGATCTTGTACAAACCCTCATTGTTTTGAGCTTGATGGTATCAGGTTTCTTGGGACATCTGGTCAAAATGTAGATGATCTTGATAAGTATTCAGAGGCAAAAGATAAAATTGACTTCATGGAAAGGACATTACGATGGAGGCATTTGGCACCAACTGCACCTAATACCCTTGGTTGCTATCCTTATACTGATAGGGATCCTTTCTTCATTCAGGATTGTCCACATGTGTACTTTGTTGGCAATCAGGAAAAATATGATACCCGTGTGATAAAGGGATCAGAAGGCCAGTTGGTTAGACTCATTTGTGTTCCTAAATTCAGTGAAAATGGAGTTGCAGTTATGTTGAATCTGAGGGATCTTGAATGTCACACTCTCAGTTTTGGAACTCAGTTCAGCCCATAA 1296 0.409 MERVQCSYESQDKTFEIGKEMYRGQQYSQIYYARLHLMRTLLYSLVSQWKPNSPVCTVLELKEGKECVVVGTLFKNMKLKPCILDEYSKERSVVPLVKPHNFVDKNDYLVLEDESGRVKLSGNVIVPSVYVTGIVVAIHGKETGAGDFLVQEVLEAGLPPQIEFPIKSREDRYVLFVSGLSIGSSKSNPLQFQLLVDHITGHLGDEKEQSIASQIVHVVIAGNSVEIARGLLNGQNLASKDLSKMAEPVKELDILLNQIAAGLPLDIMPGPCDPANFSLPQQALHRCLFPGSSVYNTFRSCTNPHCFELDGIRFLGTSGQNVDDLDKYSEAKDKIDFMERTLRWRHLAPTAPNTLGCYPYTDRDPFFIQDCPHVYFVGNQEKYDTRVIKGSEGQLVRLICVPKFSENGVAVMLNLRDLECHTLSFGTQFSP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00006 431 FunFam DNA polymerase delta small subunit 156 430 - -
Vivi16g00006 431 Pfam DNA polymerase delta subunit OB-fold domain 26 153 IPR040663 -
Vivi16g00006 431 FunFam DNA polymerase delta subunit 2 32 156 - -
Vivi16g00006 431 CDD MPP_PolD2_C 173 425 IPR041863 -
Vivi16g00006 431 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 3 425 IPR024826 -
Vivi16g00006 431 Gene3D - 165 430 - -
Vivi16g00006 431 Pfam DNA polymerase alpha/epsilon subunit B 174 384 IPR007185 GO:0003677|GO:0006260
Vivi16g00006 431 Gene3D - 32 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi16g00006 2 430 Core DNA Replication Machinery Family AT2G42120 75.058 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00006 K02328 - gmx:100780072 769.229