Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1691g00004 ATGGTCGTTAGCGGAGCCAAGTCCCTGAAGCGCGTGAAGAAGAGAGTCACCGCCGATCACCACGATTTTTTTACGTTCCCTTCACCATCCCTCGCCGCCTCGGAAAGCTTCTACATCGGTCCATTCCGCTCCAACATCCGTTCGTTTCTGACGAAGTACGCGCTTCTCCCGCCACCGTCGGCGCTGTTCCCGCACCTTCTGACGTGGCAGATCCTCTTCCGTGTAGGTGAGATCACCGAAGGCTCTGAATCTGGACCGGCGGTGGTGTGCCTCGACGTTGTGGAAGAGGACGTGGCCAGATCTAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCAACCCAGTGTGCGGGAAACGCTACCATTTTATAATCAAAGCTGATGGGGGATCAATTGGTGGATACCACAAACCGTGTATGTGTTGTGGAGACAGTTTGCATTTGTCAGAATCCAAGTGTAAGTCATGCAATCATGTAACAACCAGTGATGATGTTGAAGAATGGGTATACCACCAACTAGAGAATACAAGTCATCTTTTACATGGTGTAGTCCATGCAAATGGTTATGGGCACCTTCTCCGGGTTAATGGCAGAGAAGGGGGGTCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGTTAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATACGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGAGACATCCGTGGTATGGTGAGTGGGGATATAATTTTGGCTCTGGTAGCTATTGTCTCACGAAGGAAGCATATAAGTCTGCTGTTGACAACCTATCCAATCTACCCCTGTCCATCTTTCTCTCCCATGAGCAAAAGCCCCACTCACGTGTGCAGGATATGATCTTGTATTACCAGTCTTTGTCAGAGCATGAGCTTGTAAATATGAGGGACCTATTTTGTTTTTTGATGGGTTTGATGCACAGTGCTCGCAAGAATGCCTCTAAGTCTGATGACGTAACCTGCAAGAAGCGTCGGTTTGATGCTTCTGGATTATCAAGTTCTTGGGGGAAGAGTGACATTGAACGTGTGGAGGATGCCATGCTCAGAGTGCTGCGCGCAGTATCTGGGTCTAATTGGGTGAGCCGCCGTGCTCTTAGGGGTGCTGTTTGCAAGGTGGCGTCTCCAGAGCTTCTTGATTATTGCCTTGCTGAACTGGGAGGGAAAGTGGTGTATGGTGGCACTGTTAACAGCAGACGCAATCCTGAAACTGGAGTTGATGAATTCAGAATTGATGCGACAAGCTTCGATGGGTTTATGGCCAACAGTAATTCTTCAGGCTCAAAGTGTCCATCTGAAGAGAATCTCCTGCAATGCTTGAGATATTTATACGAGTCTTTGCTTCATCCTCGGATGATGCTAAACTATGTCGAAGAAGATACTAAAACGCTTGCAATGAGCTCAGCTCAGAAACTTCTTGACTGCAAGCAATTAATAAAAGATTATTGTACTGAGATGTTGCCAGTGTCAGATTTGTATAAAATACGCATCTCATGTCAGGTTGAGCTAGTTGATCAATCTGAAGATTCCGCAGCTAGAACTCCTCCTGAAATAATTGTGCTGCCCACAAATGCGACAGTATCTGACCTTAAGATTGAAGCGGCAAATGTATTTCAAGACGTATATCTAATGTTTAGAAGATTTCAAGTTGATGAACTACTTGGCTACAGAGGTGTGGACGATTCCACCCAAGTCAAGCACTTATTAAAACCAAATGAAGTGGTTTGTATCCGAGGAAGATGCTCCGGGAAGAATGGGGTGAGCAAGTTTCGAATGGAACGGGGACTTGAGAGGTGGACTGTGGAGTGCAGCTGTGGTGCTAAGGACGATGATGGAGAGAGAATGATGGCTTGTGATACATGTGGAGTGTGGCGGCACACCAGGTGTTCTGGCATTCCTGATATTGCACCTGTTCCAGCACGTTTTGTTTGCCAGAGATGCCAAAATTGCGACTCAAAGCCTATATCTGGTAGGCACTTAAAAGATGAGACTGTGACTAGTGTTAGTACCCCTAGAAGTAGTTTCTTTGGCAATGGTGTGCCAGTGCTTTCTGATCGTTAG 2127 0.4669 MVVSGAKSLKRVKKRVTADHHDFFTFPSPSLAASESFYIGPFRSNIRSFLTKYALLPPPSALFPHLLTWQILFRVGEITEGSESGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGNPVCGKRYHFIIKADGGSIGGYHKPCMCCGDSLHLSESKCKSCNHVTTSDDVEEWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKRHPWYGEWGYNFGSGSYCLTKEAYKSAVDNLSNLPLSIFLSHEQKPHSRVQDMILYYQSLSEHELVNMRDLFCFLMGLMHSARKNASKSDDVTCKKRRFDASGLSSSWGKSDIERVEDAMLRVLRAVSGSNWVSRRALRGAVCKVASPELLDYCLAELGGKVVYGGTVNSRRNPETGVDEFRIDATSFDGFMANSNSSGSKCPSEENLLQCLRYLYESLLHPRMMLNYVEEDTKTLAMSSAQKLLDCKQLIKDYCTEMLPVSDLYKIRISCQVELVDQSEDSAARTPPEIIVLPTNATVSDLKIEAANVFQDVYLMFRRFQVDELLGYRGVDDSTQVKHLLKPNEVVCIRGRCSGKNGVSKFRMERGLERWTVECSCGAKDDDGERMMACDTCGVWRHTRCSGIPDIAPVPARFVCQRCQNCDSKPISGRHLKDETVTSVSTPRSSFFGNGVPVLSDR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1691g00004 708 CDD PHD_MMD1_like 624 669 - -
Vivi1691g00004 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 675 IPR013083 -
Vivi1691g00004 708 SUPERFAMILY FYVE/PHD zinc finger 613 671 IPR011011 -
Vivi1691g00004 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 676 - -
Vivi1691g00004 708 Pfam PHD-finger 625 672 IPR019787 -
Vivi1691g00004 708 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Vivi1691g00004 708 SMART PHD_3 624 670 IPR001965 -
Vivi1691g00004 708 ProSiteProfiles Zinc finger PHD-type profile. 622 672 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1691g00004 86 669 PHD Transcription Factor Family AT5G22260 30.159 1.01e-83 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi1691g00004 PHD 3.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1691g00004 K26271 - gmx:100818189 1121.3