Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi168g00020 ATGAAACGCCGGTTTCTCGACACGGAGATGAGTATTCCACCATCATACGAAAACAACACAGGCGATTCATTCATCAACGCAGAGAATTTCGATACAAACATGGTGATTATACTAGCAGCACTACTATGCGCATTAATCTGCGCTTTAGGGCTGAACAACATAGCCCGCTGCGCCATGCGATGCAGCAGAAGATTCTCGGAAGAAACACCGGCGCAAACAACAGCAAGGTTGAACAAAACAGGTTTAAAAAAGCGTGAGCTGAGTCAAATTCCGGTGGCGGTTTACGGTACCGGAGAGAATATTCCGGCGACGGAGTGTCCCATTTGTCTCGGGGAATTTGAGAAAGAAGACAAAGTTCGAATGCTGCCAAAGTGTAACCACGGGTTTCATGTTAGGTGTATTGACACGTGGTTGGTGGCGCATTCTTCGTGTCCGAATTGTAGGAATTCAGTGCTTGAGAAAGAATCAAAGAGTGTTGGCGGTTCTTCCGAGGTTGCCGGAGATGGGTTGCCGGAAAATGGTACGGTGGTTGTTGAGATGCAGGGAAGTTGA 552 0.4764 MKRRFLDTEMSIPPSYENNTGDSFINAENFDTNMVIILAALLCALICALGLNNIARCAMRCSRRFSEETPAQTTARLNKTGLKKRELSQIPVAVYGTGENIPATECPICLGEFEKEDKVRMLPKCNHGFHVRCIDTWLVAHSSCPNCRNSVLEKESKSVGGSSEVAGDGLPENGTVVVEMQGS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi168g00020 183 Pfam Ring finger domain 105 148 IPR001841 -
Vivi168g00020 183 SMART ring_2 106 147 IPR001841 -
Vivi168g00020 183 MobiDBLite consensus disorder prediction 158 183 - -
Vivi168g00020 183 CDD RING-H2_EL5-like 105 148 - -
Vivi168g00020 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Vivi168g00020 183 SUPERFAMILY RING/U-box 89 154 - -
Vivi168g00020 183 PANTHER RING-H2 FINGER PROTEIN ATL78 21 166 IPR044602 GO:0016567|GO:0016740
Vivi168g00020 183 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi168g00020 1 155 C3H Transcription Factor Family AT3G10910 53.049 2.09e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi168g00020 K19040 - tcc:18602224 239.965