Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi168g00013 ATGATGAATTTGTTGTTTTTCTTCATACTTGTTACAATAATTCCAGTGTTTTCTGTTGATGATCCTGTTTTCAATGATGATATATTGGGCTTAATTGTGTTCAAAGCTGGTTTACAAGACCCTAATCACAAACTATCTTCATGGAATGATGATGATTCCACACCATGCAATTGGGAAGGTGTGAAATGTGATTCTTCAACCAATAGAGTCACTTCTCTTGTTCTTGATGGTTTCTCTCTCTCAGGTCACATTGATAGAGGCTTATTGAGGTTACAGTTTCTTCAAACATTATCACTCAAGGGTAACAATTTCACAGGTTTCATAAACCCTGATCTTCCAAAGCTTGGAGGCTTAGAAGCTGTTGATTTCAGTGATAACAATCTTCAAGGGTCTATTCCTGAGGAGTTTTTTCAGCAATGTGGATCTTTGAAAAATGTGAACTTTGCTGAGAATAATCTCTCAGGTAATGTTCCTGAGTCTATTAGTAGTTGTGCATCTTTGAGGAATGTTAACTTTTCTTGTAATCAAATTCATGGAAAGTTGCCATCTGAGGTTTGGGTTTTGAGAGGTTTACAGTCTTTTGATGTCTCAAATAACTTGCTTGAGGGAGAGATTGTTCCTGAGGGGATTCAGAATCTGTATGATTTGAGGGAATTGAGTTTGAGGAAAAACCGATTTACCGGTCGAATTCCCGAGGAGATTGGTGGTTGTGTAGGTTTGAGATCACTTGATTTGAGTGGTAATTTTCTTTCTGGTGGAATTCCACAATCAATGCAAAGACTTGGTTCATGTAAATCTCTTAGTTTGCAAGGAAATTCATTCACTGGTAATGTTCCTGATTGGATCGGCGAGATGAAAGGTCTCGAAAATTTGGATCTTTCTTCGAATAGATTTTCGGGTTGGATTCCGAAGTCGTTAGGGAAACTAGAAATGCTGCAAAGGTTGAATTTTTCTAGGAATCAGTTGACAGGAAAGTTCCCCGATTCGATGGTAAACTGTACTAATCTTTCGGCTTTCGATATCAGTCGTAATAATTTGGATGGTTATCTTCCGTCGTGGATTTTTACGAAGGGTGATTATCACGGTCTCGAGGTTTTGGATTTGTCTTCCAATGGATTTTCTGGTGGAATTCCATCTGGTATCGGCGGTCTTCGTAGCCTGAAGCTGTTGAATATGTCTTCGAACAAGTTCTATGGTTCTGTTCCGGTTGGTATCGGTGAGCTCAAATCGCTATACATTGTTGATTTGAGTGGTAACAAACTTAATGGAAGCATTCCTTTTGAAATCGAAGGCGCGGTTTTACTTAATGAATTGAGGCTACAGAAGAATTTACTTCGAGGGAGAATCCCAGATCGAATTGCGAAGTGTTCGGCTCTAACATCTTTGGTTCTTTCTCACAACAAGCTTACTGGTTCAATTCCTAAGGGCATTGCAAACCTAACGAATCTTCGGCATGTAGATTTGTCGTGGAACAAACTCTCTGGAAGTTTACCGAAGGAGTTAACGAATCTTTCGAATCTCTTATCGTTTAATGTATCCTACAACCACCTTCAAGGCGAGTTACCGGTCGGCGGTTTCTTCAACACCATCTCCTCCTCATCTGTAGCCGGTAACTCATTGTTGTGCGGTTCTGTTGTCAACCACTCCTGTCCATCGGTTCATCCCAAACCGATTGTCTTGAATCCGAATTCTTCTGCTTCCAACTCCAGCATTTCCTCGAAATATCACCGACACAAGATCATACTCAGTATATCTGCTCTTATTGCTATCGGTGCAGCTGCTTTTATTGCCGTTGGTGTCGTCGCTATCACTTTCCTAAACATGCGTGCGCGTTCCTCAATGGCACGTGCTGCTGCTCCGTTTGCGTTCTCCGGTGGCGATGACTATAGCAACTCGCCGGCAAATGATCCGAACTACGGCAAGCTTGTGATGTTTTCCGGTGATGCAGACTTTGCTGATGGAGCTCACAATCTCCTTAACAAAGAAAGTGAAATAGGCCGTGGTGGATTCGGAGTTGTTTACCGCACGTTTCTACGAGACGGGCATGCTGTTGCGATAAAAAAGCTTACAGTCTCGAGTTTGATCAAGTCCCAAGAAGAATTCGAGAAGGAAGTGAAACGGTTTGGGAAGATTCGTCACGATAATCTTCTAGCACTCGAAGGCTACTACTGGACTTCTTCGTTGCAGCTCCTCATTTACAAGTACCAATCAAGCGGTAGTTTGCATAAGCTTCTACACGGCGATAAAGGCGATAAAACCAAAAACGTCTTATCATGGCGACAAAGGTTCAAGATTATTCTCGGCATGGCAAAAGGACTATCACATCTACATGAATCGAACGTAATCCACTACAATCTCAAATCAACCAACGTCCTCTTCGACGTTTCAGACGAACCAAAAATAGGCGATTTCGGCCTGGTGAAGCTCTTACCAATGCTAGACCATTGCGTATTAAGCAGCAAAATCCAAAGCGCGCTAGGATACATGGCACCCGAGTTCGCTTGCCGCACGGTCAAGATAACCGAGAAATGCGACGTGTACGGTTTCGGAATCCTTATATTGGAGATAGTAACAGGTAAAAAGCCTGTGGAGTACATGGAGGATGATGTGGTGGTTCTATGTGACATGGTGAGGGGTGCATTGGAAGAAGGAAAAGTTGAGGAATGTGTTGATGAAAAGCTTTTAGGTAATTTTGCAGCTGAAGAAGCGATTCCTGTGATAAAACTGGGATTGATTTGTGCATCACAAGTTCCATCAAATAGGCCTGATATGAGTGAGGTTATCAATATATTGGAGTTGATTCAGTGTCCTTCAGAAGGACAAGAGGAGTTATTAGAATGA 2841 0.4196 MMNLLFFFILVTIIPVFSVDDPVFNDDILGLIVFKAGLQDPNHKLSSWNDDDSTPCNWEGVKCDSSTNRVTSLVLDGFSLSGHIDRGLLRLQFLQTLSLKGNNFTGFINPDLPKLGGLEAVDFSDNNLQGSIPEEFFQQCGSLKNVNFAENNLSGNVPESISSCASLRNVNFSCNQIHGKLPSEVWVLRGLQSFDVSNNLLEGEIVPEGIQNLYDLRELSLRKNRFTGRIPEEIGGCVGLRSLDLSGNFLSGGIPQSMQRLGSCKSLSLQGNSFTGNVPDWIGEMKGLENLDLSSNRFSGWIPKSLGKLEMLQRLNFSRNQLTGKFPDSMVNCTNLSAFDISRNNLDGYLPSWIFTKGDYHGLEVLDLSSNGFSGGIPSGIGGLRSLKLLNMSSNKFYGSVPVGIGELKSLYIVDLSGNKLNGSIPFEIEGAVLLNELRLQKNLLRGRIPDRIAKCSALTSLVLSHNKLTGSIPKGIANLTNLRHVDLSWNKLSGSLPKELTNLSNLLSFNVSYNHLQGELPVGGFFNTISSSSVAGNSLLCGSVVNHSCPSVHPKPIVLNPNSSASNSSISSKYHRHKIILSISALIAIGAAAFIAVGVVAITFLNMRARSSMARAAAPFAFSGGDDYSNSPANDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEEFEKEVKRFGKIRHDNLLALEGYYWTSSLQLLIYKYQSSGSLHKLLHGDKGDKTKNVLSWRQRFKIILGMAKGLSHLHESNVIHYNLKSTNVLFDVSDEPKIGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEIVTGKKPVEYMEDDVVVLCDMVRGALEEGKVEECVDEKLLGNFAAEEAIPVIKLGLICASQVPSNRPDMSEVINILELIQCPSEGQEELLE 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi168g00013 946 Gene3D Ribonuclease Inhibitor 29 136 IPR032675 -
Vivi168g00013 946 Gene3D Ribonuclease Inhibitor 208 261 IPR032675 -
Vivi168g00013 946 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 356 553 - -
Vivi168g00013 946 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Vivi168g00013 946 ProSiteProfiles Protein kinase domain profile. 659 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi168g00013 946 Gene3D Ribonuclease Inhibitor 262 553 IPR032675 -
Vivi168g00013 946 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 736 940 - -
Vivi168g00013 946 FunFam LRR receptor-like serine/threonine-protein kinase 283 355 - -
Vivi168g00013 946 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 434 593 - -
Vivi168g00013 946 Gene3D Transferase(Phosphotransferase) domain 1 737 943 - -
Vivi168g00013 946 SUPERFAMILY Protein kinase-like (PK-like) 660 935 IPR011009 -
Vivi168g00013 946 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 653 735 - -
Vivi168g00013 946 FunFam Leucine-rich repeat receptor-like protein kinase 24 182 - -
Vivi168g00013 946 SUPERFAMILY L domain-like 42 354 - -
Vivi168g00013 946 Gene3D Phosphorylase Kinase; domain 1 648 735 - -
Vivi168g00013 946 ProSitePatterns Protein kinases ATP-binding region signature. 665 688 IPR017441 GO:0005524
Vivi168g00013 946 Pfam Leucine rich repeat 435 493 IPR001611 GO:0005515
Vivi168g00013 946 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Vivi168g00013 946 Pfam Leucine rich repeat 189 248 IPR001611 GO:0005515
Vivi168g00013 946 SMART LRR_typ_2 480 503 IPR003591 -
Vivi168g00013 946 SMART LRR_typ_2 213 237 IPR003591 -
Vivi168g00013 946 SMART LRR_typ_2 188 212 IPR003591 -
Vivi168g00013 946 SMART LRR_typ_2 504 528 IPR003591 -
Vivi168g00013 946 SMART LRR_typ_2 115 139 IPR003591 -
Vivi168g00013 946 SMART LRR_typ_2 384 408 IPR003591 -
Vivi168g00013 946 SMART LRR_typ_2 285 308 IPR003591 -
Vivi168g00013 946 SMART LRR_typ_2 309 333 IPR003591 -
Vivi168g00013 946 SUPERFAMILY L domain-like 285 543 - -
Vivi168g00013 946 Pfam Protein tyrosine and serine/threonine kinase 660 871 IPR001245 GO:0004672|GO:0006468
Vivi168g00013 946 FunFam Inactive leucine-rich repeat receptor-like protein kinase 183 280 - -
Vivi168g00013 946 Gene3D Ribonuclease Inhibitor 137 207 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi168g00013 2 942 Receptor kinase-like Gene Family AT5G01890 58.599 0.0 1099
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vivi168g00013 PK_Tyr_Ser-Thr 2.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi168g00013 - - mtr:11433630 1554.27