LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1689g00001	ATGGGAAGACAACCATGTTGTGATAAGGTTGGTTTGAAGAGAGGACCATGGACTATTGAGGAAGATCATAAGCTTGTGAGTTTTATCCTTAATAATGGGATTCATTGTTGGAGAGTGGTTCCTAAACTTGCAGGTCTTTTAAGATGCGGAAAAAGTTGTAGACTGAGATGGATTAATTATCTTAGGCCGGACCTTAAGAGAGGTGGGTTTACTGAAATGGAAGAAGATCAAATTATTCAACTACATGCACGTCTTGGTAACAGGTGGTCAAAAATTGCTTCGCATTTTCCTGGAAGAACAGACAATGAAATTAAGAACCATTGGAACACAAGAATCAAGAAGAAGCTAAAATTCCTTGGTTTGGATTCTATGAACCTCAAACCAATTGAGCAAAAGCAACAAACTGATAATTATGATGACAAAGACAAAACTAACCACCAACAACTGAATGATTCAGAAAATGTGGAGAATATTAAATCCTTGGATAGTGATGGCACAAAAGAAATGACAAAAACAGAAGAAAACAAAGTGTTTTGGGATGATAGTGATGAACTTTTAAACAAGTTTGAAATGCTATGTTCAACTTTGGACTGGGGCACATGGATAAGCCAAGACACCAACATTAGTACTACTACTAATTCTGTTTCTAGTTCTTCTGTCTCTTTGGATGATACTACTACTAGCCATATTTCTATTGATGAATCCTCCTACTTTCAACATGATTCATTACACCAATGGGTTGATAATATGGATTCCATTCTCTCATGGGATGCCTTCAATCCCCTTGATCAAGATATTTCTTTTTTCGAAAAATAG	816	0.3615	MGRQPCCDKVGLKRGPWTIEEDHKLVSFILNNGIHCWRVVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHARLGNRWSKIASHFPGRTDNEIKNHWNTRIKKKLKFLGLDSMNLKPIEQKQQTDNYDDKDKTNHQQLNDSENVENIKSLDSDGTKEMTKTEENKVFWDDSDELLNKFEMLCSTLDWGTWISQDTNISTTTNSVSSSSVSLDDTTTSHISIDESSYFQHDSLHQWVDNMDSILSWDAFNPLDQDISFFEK	271

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1689g00001	271	SMART	sant	13	63	IPR001005	-
	Vivi1689g00001	271	SMART	sant	66	114	IPR001005	-
	Vivi1689g00001	271	Pfam	Myb-like DNA-binding domain	67	110	IPR001005	-
	Vivi1689g00001	271	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Vivi1689g00001	271	FunFam	MYB transcription factor	11	67	-	-
	Vivi1689g00001	271	CDD	SANT	16	61	IPR001005	-
	Vivi1689g00001	271	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	219	-	-
	Vivi1689g00001	271	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Vivi1689g00001	271	MobiDBLite	consensus disorder prediction	133	149	-	-
	Vivi1689g00001	271	MobiDBLite	consensus disorder prediction	130	154	-	-
	Vivi1689g00001	271	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Vivi1689g00001	271	CDD	SANT	70	110	IPR001005	-
	Vivi1689g00001	271	Gene3D	-	68	154	-	-
	Vivi1689g00001	271	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Vivi1689g00001	271	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Vivi1689g00001	271	Gene3D	-	11	67	-	-
	Vivi1689g00001	271	FunFam	MYB transcription factor	68	129	-	-
	Vivi1689g00001	271	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1689g00001	1	192	MYB Transcription Factor Family	AT5G16600	56.158	3.82e-74	228

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vivi1689g00001		Myb_DNA-binding	8.7e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1689g00001	K09422		-	gmx:100783231	397.127