Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1679g00001 ATGGGTGATGTGGATCAGAAAAAGGAAAGGAAGAAGAACATGAATGGTTCAATATGGTCCATTTTCATGCATGCAGACACACAAGATTGGTTCCTTATGATTTTAGGTACCATTGGAGCCATTGGTGAAGGCTTTACTACACCTGTGATGTTGTTTCTTAGTAGCCGCGTGATTAATACTTATGGAACTTCATCTTCCACCGATGGAAACACTTTCATCCATAATAGCAATAAGAATGCAATGGCTTGGATCTATTTGGCTTGTGCATCTTTTGTTGTTTGTTTCCTTGAGGGCTATTGTTGGACAAGAACAAGTGGAAGACAAGCTGCAAAAATGAGATGCAAATATTTGAAAGCAGTTCTTAGACAAGATGTTGCTTACTTTGATTTGCAAATCACAAGTACTTCCGAGATTATCACTAGCGTATCCAATGACACTCTTTTAATCCAAGATGTTCTTAGCGAGAAGGTTCCAAATTTTTTGATGAACATTTCATTGTTCATTGGAAGTTACATAATGCCTTTTATAATACTATGGAGACTAGCAATTGTAGCATTTCCATTTTGCGTTATTCTAGTGATTCCTGGATTAATCTATGGCAAAACTTTGATGAGTTTATCAAGAAAGATTAGAGAAGAGTATAGTCAAGCTGGTATAGTTGCAGAACAAACGCTATCTTCTATCAGAACTGTTTATTCTTTTGTTGGGGAACAGAAGTCCATGAATGCTTTCTCTAAAGCTCTAGAAGGTACTGTGGAGTTGGGTTTAAAACAAGGATTAGCGAAAGGTTTAGCCATTGGAAGCAATGGTTTTGTGTTTGCCATTTGGGCTTTCTTGTGCTATTATGGTAGCAAAATGGTTATGTACCATGGTGCTCAAGGAGGGACAGTTTTTGCAGTTGGAGCAAGCATAACGGTCGGTGGATTAGCATTAGGAGCTAGTTTATCCAACATGAAGTATTTCTCGGATGCAATTACGGCCGGTGAAAGAATAAAGAGAGTAATAGAAAGAGTTCCTGAGATAGATTCTATCAGTGCAAAAGGAGAAATATTAGAAAATGTTTCCGGGGAAGTGAAATTCGACAATGTAGAATTTGCATACCCAACAAGACCCGAAACCGTTATCCTTAAAAAGTTTAGTCTCAAGATTCCAGCAGGAAAAACAGTTGCGTTGGTTGGTGAAAGTGGTTCAGGGAAATCGACAGTGGTATCGTTGTTGCAACGATTTTATGATCCAATTGGTGGAGAGATTCGCCTCGATGGAGTGGCTATTCATAAGTTTAAGATTAAATGGCTTAGATCAATGATGGGTTTGGTTAGTCAAGAACCTGCTTTGTTTGCAACAAGCATTAAAGAGAATATAATGTTTGGTAAAGAAGATGCTACTGAAGATGAGATTGTTGAAGCTGCTAAAATTTGTAATGCTCATGATTTCATTTCGTTGCTTCCTAATGGTTACAATACTCAGGTAGGAGAAAGAGGTGTTCAATTATCAGGTGGACAAAAACAAAGGATAGCAATTGCAAGAGCAATAATTAAAAAACCAAGAATCCTTCTTTTAGACGAAGCAACCAGCGCATTAGACACCGAATCAGAATTGCTCGTTCAACAAGCACTCGACAATGCAACTACTGGTTGCACCTCCATCATCATTGCTCATCGTCTCTCCACAATCCAAAACGCTGACATTGTTGCTGTTGTGCACGGTGGAAAAGTCACCGAGATTGGTTCACATGACGAGCTTCTCCAAAACGATAACAACCTATACGCCTCCCTCGTTCGCCTTCAACAAACCAAAACTGAATCAGAAGAAACGGTTACAACTACTTTCACAAACACACAAACAGCATCCTTGGTGGCAGACCTTACCAGTTCAGTTGAAGATAAATTCGCTAATGTTAGTATACAGAACCACGATATTGATGCTGATAATTCGGTATCTTTTTGGAGATTACTTGCATTGAATGCTCCAGAATGGAAGCAAGGGGTTTTGGGGAGTTTTAATGCAATGGTGTTTGGTGCGATTCATCCTATTTTTGCATTTACAATGGGATCGATGATATCTGTGTATTTTAATACAGATCATGAGGAGATAAAAAACAAGACTAGAGTTTTTTCACTTTGGTTTTTCGGTTTGTCGTTGATAACTTTGGTGGTTAATATTGGACAACACTATAGCTTTGCTTACATGGGAGAGTACTTGACTAAACGTGTAAGGGAGAGCATGCTTTCTAAAATACTCAGTTTTGAAGTTGGGTGGTTCGATCAAGATCAAAATTCTAGTGGTGCGATTTCTTCTCGACTTGCCAATGATGCTAATGTGGTGAGGTCATTAGTAGGTGACAGAATGTTTTTGTTGGTACAAACATTTTCAGCAGTTGCAACAGCATACACTATGGGTCTAGTCATTTCATGGAGGCTCACACTTGTTACCATAGCTTCTCAACCAATTATAATTGCTTGTTTTTACACAAAAGGTGTTTTACTCAAAAGCCTTTCAAGCAAATCTATTAAGGCCCAAGAACAAAGTAGCAAGTTAGCTTCTGAGGCAGTTTCAAATCTTAGAACCATTACTGCTTTTTCGTCTCAAGAAAGAATACTCAAAATGCTTGAAGAGGCCCAACAAGGCCCGATTCAAGAGAATTTTCGACAGGCGTGGTTTGCTGGTCTTGGGCTTGGGTTTTCGCAATTCTTCACGGCTTGTTCTTGGTCCTTGAATTATTGGTACGGCGGGAAGCTTTTGGTTGATGGGTTGATTACGAAGAAAGCGTTGTTTGAGAGTTTTATGGTTGTGTTAACTACGGGGAGGGTTATAGGTGAAGCTGGAAGCATGACTAAAGATATTTCCAAAGGTGCAGGTACCGTGAGGTCGATCTTTGGCATTCTAGATCGGCACACAGAAATCGAAACAGACGAGCCTAATACGTTTAAGCCAGTTACTCTAACGGGCCAAATAGAATTTTGTGACGTGCATTTCGCGTACCCTGCTAGGCCTAACGTGATTATATTTCAAGGTTTTTCGATTAAAATTGAAGCGGGAAAATCGACTGCATTAGTAGGGCAAAGTGGTTCGGGAAAGTCGACGATCATAGGATTAATAGAAAGATTCTATGATCCATTGCAAGGAAGTGTGACAATAGATGGTATGAACATAAAATCATATAACCTAAAGTCACTAAGAAGACACATAGCACTTGTGAGCCAAGAGCCAACATTGATTAATGGAACCATAAGGGACAACATTGCATATGGAACAACATGTGACAAAATTGATGAAGTTGAGATCATAGAAGCAGCAAGAGTTGCCAATGCTCATGATTTCATAGCTGGTTTGAGAGATGGGTATGAGACATGGTGTGGAGACAAAGGGGTGCAGCTTTCTGGGGGACAAAAACAAAGGATAGCAATAGCCAGAGCTATGTTAAAGAATCCAAAAGTGTTGCTGCTAGATGAGGCAACAAGTGCACTAGATAACAAGTCAGAGAAAGTGGTGCAAGAAGCATTGGATAAGGTAATGGTTGGAAGGACAAGTGTGGTTGTGGCACATAGGTTGAGTACAATACAAAATTGTGATGTTATTGCTGTTTTAGATAAAGGGAAAATGGTTGAGATTGGAACTCACAAAACCTTGCTGGCTAATGGACCTTCTGGTGCTTATTACTCTTTGGTTAACCTTCAAACTAAACATGCAGTTTCAAAAAATAAAGATAGCTTGTGA 3717 0.3933 MGDVDQKKERKKNMNGSIWSIFMHADTQDWFLMILGTIGAIGEGFTTPVMLFLSSRVINTYGTSSSTDGNTFIHNSNKNAMAWIYLACASFVVCFLEGYCWTRTSGRQAAKMRCKYLKAVLRQDVAYFDLQITSTSEIITSVSNDTLLIQDVLSEKVPNFLMNISLFIGSYIMPFIILWRLAIVAFPFCVILVIPGLIYGKTLMSLSRKIREEYSQAGIVAEQTLSSIRTVYSFVGEQKSMNAFSKALEGTVELGLKQGLAKGLAIGSNGFVFAIWAFLCYYGSKMVMYHGAQGGTVFAVGASITVGGLALGASLSNMKYFSDAITAGERIKRVIERVPEIDSISAKGEILENVSGEVKFDNVEFAYPTRPETVILKKFSLKIPAGKTVALVGESGSGKSTVVSLLQRFYDPIGGEIRLDGVAIHKFKIKWLRSMMGLVSQEPALFATSIKENIMFGKEDATEDEIVEAAKICNAHDFISLLPNGYNTQVGERGVQLSGGQKQRIAIARAIIKKPRILLLDEATSALDTESELLVQQALDNATTGCTSIIIAHRLSTIQNADIVAVVHGGKVTEIGSHDELLQNDNNLYASLVRLQQTKTESEETVTTTFTNTQTASLVADLTSSVEDKFANVSIQNHDIDADNSVSFWRLLALNAPEWKQGVLGSFNAMVFGAIHPIFAFTMGSMISVYFNTDHEEIKNKTRVFSLWFFGLSLITLVVNIGQHYSFAYMGEYLTKRVRESMLSKILSFEVGWFDQDQNSSGAISSRLANDANVVRSLVGDRMFLLVQTFSAVATAYTMGLVISWRLTLVTIASQPIIIACFYTKGVLLKSLSSKSIKAQEQSSKLASEAVSNLRTITAFSSQERILKMLEEAQQGPIQENFRQAWFAGLGLGFSQFFTACSWSLNYWYGGKLLVDGLITKKALFESFMVVLTTGRVIGEAGSMTKDISKGAGTVRSIFGILDRHTEIETDEPNTFKPVTLTGQIEFCDVHFAYPARPNVIIFQGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLQGSVTIDGMNIKSYNLKSLRRHIALVSQEPTLINGTIRDNIAYGTTCDKIDEVEIIEAARVANAHDFIAGLRDGYETWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNKSEKVVQEALDKVMVGRTSVVVAHRLSTIQNCDVIAVLDKGKMVEIGTHKTLLANGPSGAYYSLVNLQTKHAVSKNKDSL 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1679g00001 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 974 1226 IPR027417 -
Vivi1679g00001 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 985 1223 IPR003439 GO:0005524
Vivi1679g00001 1238 CDD ABC_MTABC3_MDL1_MDL2 985 1226 - -
Vivi1679g00001 1238 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Vivi1679g00001 1238 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524|GO:0016887
Vivi1679g00001 1238 SMART AAA_5 385 588 IPR003593 GO:0016887
Vivi1679g00001 1238 SMART AAA_5 1012 1199 IPR003593 GO:0016887
Vivi1679g00001 1238 SUPERFAMILY ABC transporter transmembrane region 650 971 IPR036640 GO:0005524|GO:0016020
Vivi1679g00001 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 669 950 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1679g00001 1238 Pfam ABC transporter transmembrane region 668 933 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1679g00001 1238 Pfam ABC transporter transmembrane region 33 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1679g00001 1238 Pfam ABC transporter 1004 1154 IPR003439 GO:0005524
Vivi1679g00001 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 596 IPR027417 -
Vivi1679g00001 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Vivi1679g00001 1238 FunFam Putative ABC transporter B family member 8 610 973 - -
Vivi1679g00001 1238 FunFam ABC transporter B family member 4 975 1233 - -
Vivi1679g00001 1238 FunFam ABC transporter B family member 4 348 604 - -
Vivi1679g00001 1238 Pfam ABC transporter 376 525 IPR003439 GO:0005524
Vivi1679g00001 1238 CDD ABC_6TM_Pgp_ABCB1_D2_like 652 968 - -
Vivi1679g00001 1238 ProSitePatterns ABC transporters family signature. 1126 1140 IPR017871 GO:0005524|GO:0016887
Vivi1679g00001 1238 Gene3D ABC transporter type 1, transmembrane domain 20 899 IPR036640 GO:0005524|GO:0016020
Vivi1679g00001 1238 Gene3D - 975 1237 IPR027417 -
Vivi1679g00001 1238 FunFam ABC transporter B family member 1 20 357 - -
Vivi1679g00001 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1679g00001 1238 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 331 - -
Vivi1679g00001 1238 Gene3D - 348 597 IPR027417 -
Vivi1679g00001 1238 PANTHER ABC TRANSPORTER B FAMILY 6 675 IPR039421 -
Vivi1679g00001 1238 SUPERFAMILY ABC transporter transmembrane region 24 340 IPR036640 GO:0005524|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1679g00001 12 628 Calmodulin-binding Proteins AT2G36910 35.247 7.36e-104 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1679g00001 K05658 - gmx:100791575 1741.86