LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi166g00014	ATGTATTCAGGAGTAATGGAAAGAAACACAGAATGGAGTGTTATAGAAGAAGATAGATGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTCATTGAGTATGTCAAACTGCACGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTACAGGATTGAGAAGAAATGGGAAAAGTTGTAGGTTAAGATGGGTCAACTATTTGAGGCCAGACCTTAAGAAGGGCCAGATAACACAACAAGAAGAAAGCATAATCCTAGAGCTTCATGCTAGATGGGGAAATAGATGGTCAACAATTGCAAGAAGCTTGCCGGGAAGAACAGACAACGAAATAAAGAACTATTGGAGAACACATTTCAAGAAAAAGACTAAAAAACCGTTCGATGCTGCTGAAAAGGCAAAAAATCGCTCTTTCAAAAGGCAGCAACAACAGTTGAAACTGCAACAGCACCAAATTCAGCAGCAGCAACAATTTCAATACAATATGGACATGAAAGGGATTATAGACTTGTTGCTTGATGAAAATGACTACTATAGTGTGCCTTCTACTTCTCAAGAGAGTCAAGAAATGGTTACCATGTATGGAGAAACACCAGAACAACAAGGTTACTCTTACTCTATGGTCAATGGTAGTGGTAATGTTTATGCTCAAGAGTCTTCAAATGAAGAAATTTTGTGGGATGGACTTTGGAACATGGATGATGTTCTTGGAAGTTCAATGCAACCTATGATGCTACAAGCAAAACCAGCCAATGTGCACAATTTAGTTACTCCCTTTTGTTAA	786	0.3931	MYSGVMERNTEWSVIEEDRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYLRPDLKKGQITQQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKKPFDAAEKAKNRSFKRQQQQLKLQQHQIQQQQQFQYNMDMKGIIDLLLDENDYYSVPSTSQESQEMVTMYGETPEQQGYSYSMVNGSGNVYAQESSNEEILWDGLWNMDDVLGSSMQPMMLQAKPANVHNLVTPFC	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi166g00014	261	FunFam	Myb transcription factor	22	74	-	-
	Vivi166g00014	261	CDD	SANT	24	69	IPR001005	-
	Vivi166g00014	261	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Vivi166g00014	261	ProSiteProfiles	Myb-like domain profile.	17	69	IPR001005	-
	Vivi166g00014	261	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	74	124	IPR017930	-
	Vivi166g00014	261	SMART	sant	74	122	IPR001005	-
	Vivi166g00014	261	SMART	sant	21	71	IPR001005	-
	Vivi166g00014	261	Gene3D	-	79	123	-	-
	Vivi166g00014	261	Pfam	Myb-like DNA-binding domain	75	119	IPR001005	-
	Vivi166g00014	261	Pfam	Myb-like DNA-binding domain	22	69	IPR001005	-
	Vivi166g00014	261	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	21	73	IPR017930	-
	Vivi166g00014	261	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	16	232	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Vivi166g00014	261	CDD	SANT	79	120	IPR001005	-
	Vivi166g00014	261	Gene3D	-	22	74	-	-
	Vivi166g00014	261	FunFam	MYB-related transcription factor	79	123	-	-
	Vivi166g00014	261	SUPERFAMILY	Homeodomain-like	19	116	IPR009057	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi166g00014	17	261	MYB Transcription Factor Family	AT3G24310	56.202	5.74e-84	250

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vivi166g00014		Myb_DNA-binding	8e-17	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi166g00014	K09422		-	gmx:100782089	347.821