Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi166g00003 ATGGAACAAGAAGAGCACGAAGTGTACGGTGCTGACATTCCCGACGAAGAGGTTGAGATGGAAGCTGACATGGAAGCTGAACAACAAGGAGATGAAGAGCTTCCCCCCAATCACACCACCAAGGAATTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGCGCCCTTCGCGAAATGCAAGCTAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGCATCTCAAGCTGAAAAGGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTCGACTACGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTCAACAGAGTTACAATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAGTTTGTTGAGATTGATGCTGTTCAAAATGCACTCATTTTAAATGAAACTGAATTGCATGGCCGACAACTAAAGGTGTCTGCAAAACGTACAAATGTTCCTGGATTGAAGCAGTACTTTGGAAGAAGACCTGCTGGTTTCCGTGGTAGGAGGCCTTTCATGCCTGCACCATTCTTTCCACCATATGGTTACGGGGTTCCGAGATATAGAAGACCGACGCGATACCGACCATACTAG 651 0.4593 MEQEEHEVYGADIPDEEVEMEADMEAEQQGDEELPPNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSASQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALILNETELHGRQLKVSAKRTNVPGLKQYFGRRPAGFRGRRPFMPAPFFPPYGYGVPRYRRPTRYRPY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi166g00003 216 Gene3D - 11 173 IPR012677 -
Vivi166g00003 216 CDD RRM_II_PABPs 94 165 - -
Vivi166g00003 216 MobiDBLite consensus disorder prediction 57 87 - -
Vivi166g00003 216 SMART rrm1_1 94 165 IPR000504 GO:0003723
Vivi166g00003 216 SUPERFAMILY RNA-binding domain, RBD 83 190 IPR035979 GO:0003676
Vivi166g00003 216 Coils Coil 43 70 - -
Vivi166g00003 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Vivi166g00003 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Vivi166g00003 216 MobiDBLite consensus disorder prediction 1 44 - -
Vivi166g00003 216 MobiDBLite consensus disorder prediction 1 30 - -
Vivi166g00003 216 FunFam Polyadenylate-binding protein 1 87 173 - -
Vivi166g00003 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 24 182 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi166g00003 94 165 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 6.17e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi166g00003 K14396 - gmx:100527139 319.701