Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi165g00020 ATGGAGGATCAAGCTTTATTAGGTTATGAACCATTTGTTAATGTTGGAAGAGATGAGGAGGAAGAAGATGAGTTTTGCAGCTGTTGTGAAGATGAAGAAGAAGAAAGAGAACAACAGCAACAAGGAGAAGAAGAATGGAAGGAAACTGAGGAGACAGTGGTGGTGGAAGGGTTGAAGGAAGAGCTTGATGAATTTTCAGTAAGAATGTACTTTAAGGGTTTGTCAATAACTGGGGTTGAGAATTCAACTACAGGGTTTTCTGGAATTGGAGTGTTTATGGAAAGATCATCAAAGTTTTCTCCTATAAGGGTGCAGAAAAGGCTTGATTTTTATGCTGAGGAGCCTATGGTTGATTACTTGGCACTCATGGATGGTTTGTTGGAAGCTTTGCACAACAAGATCCGTAGGGTTTTTGCTTTCACAGATTCTGAATTGTTGTATAAGACAACATTTGAGGAAAATTTGGACATGCCGCTTTTGATGGCACTAAAAGAAAGGATTCTGGAACATGCAGATAATTTTGAAACTTTTGATCTGAAGCTTATACCAAGCATTGATCTTGAGCAGCCACTGCAGTTAGCCAAAGTAGCTATGGGAATTATCACTTTTCCGGTAAACGAAAAAACATCACTAGAGAATTGTTCTATTTGTTGCGATGACAAGCCAGTGCCAATGATGATTTCATTGAAATGTTCACACACTTTCTGTTCACATTGCTTGAGGTCCTATGCTGATGGTAAACTACAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCAGGATGCAGATATTGCATCTCGGCACCCGAGTGCAAGACTTTTCTTCCATTCGCCTCCTTTGAATCTCTGGAGAAAGCCCTTTCAGAAGCGAATATCGGTCAGTCAGAAAGATTTTATTGTCCGTTTCCGAATTGCTCAGTTCTCCTCGATCCTTGCGAGTGTTTGTCGGCAATGGACGGTTCATCTAGTCAGTCAGACAATTCTTGTATCGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGATTGCGGTGTTCCTTGGCATTCTTCCATGAGCTGTGAAGAATACCAGCATTTGCCAGAGGGGGAGAGAGATGCTTCTGACATTAGCTTGCATCGTCTTGCACAGAATAAAAGGTGGAAGCGTTGTCAACAGTGTCGTAGAATGATTGAGCTTGCTCAAGGTTGTTACCATATGACATGCTGGTGTGGTCACGAATTCTGCTATTCTTGTGGCGCAGAATACAGGAATGGCCAACAAACATGTCAATGTGCATTTTGGGATGAGGACAGCTTGACAAACTCCCTTCAAGAATCAGAACAATGGGCATGGGAGACTTCTATGATCATGGATGCATACTCAGATCAAGAACGGTCACAACTCGCACTTATACAACGGTTCCTTGACGGCGGTTTTAGTCTCAGTGACCACAATCCCTACCAATCTCCTCCTCCTCCTCCTCCCCCTCAATGTACAGAATCCTTTGTAGATCCCTTGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTTTCTGTGATAAGTGACAACTACTATGAAGATTACATGCAATAA 1578 0.4214 MEDQALLGYEPFVNVGRDEEEEDEFCSCCEDEEEEREQQQQGEEEWKETEETVVVEGLKEELDEFSVRMYFKGLSITGVENSTTGFSGIGVFMERSSKFSPIRVQKRLDFYAEEPMVDYLALMDGLLEALHNKIRRVFAFTDSELLYKTTFEENLDMPLLMALKERILEHADNFETFDLKLIPSIDLEQPLQLAKVAMGIITFPVNEKTSLENCSICCDDKPVPMMISLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISAPECKTFLPFASFESLEKALSEANIGQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCQRFICVDCGVPWHSSMSCEEYQHLPEGERDASDISLHRLAQNKRWKRCQQCRRMIELAQGCYHMTCWCGHEFCYSCGAEYRNGQQTCQCAFWDEDSLTNSLQESEQWAWETSMIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPPPPPQCTESFVDPLKDLHQLPWLERFVSVISDNYYEDYMQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi165g00020 525 FunFam RBR-type E3 ubiquitin transferase 351 466 - -
Vivi165g00020 525 Pfam IBR domain, a half RING-finger domain 287 353 IPR002867 GO:0008270
Vivi165g00020 525 Pfam IBR domain, a half RING-finger domain 373 422 IPR002867 GO:0008270
Vivi165g00020 525 MobiDBLite consensus disorder prediction 1 49 - -
Vivi165g00020 525 Coils Coil 29 49 - -
Vivi165g00020 525 MobiDBLite consensus disorder prediction 16 39 - -
Vivi165g00020 525 FunFam RBR-type E3 ubiquitin transferase 67 200 - -
Vivi165g00020 525 SUPERFAMILY RING/U-box 210 287 - -
Vivi165g00020 525 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
Vivi165g00020 525 Gene3D - 350 467 - -
Vivi165g00020 525 ProSiteProfiles TRIAD supradomain profile. 210 428 IPR044066 -
Vivi165g00020 525 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 465 IPR031127 GO:0004842|GO:0016567
Vivi165g00020 525 CDD Rcat_RBR_unk 379 415 - -
Vivi165g00020 525 SUPERFAMILY RING/U-box 366 430 - -
Vivi165g00020 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 294 IPR013083 -
Vivi165g00020 525 Gene3D - 67 200 IPR036397 GO:0003676
Vivi165g00020 525 ProSiteProfiles Zinc finger RING-type profile. 214 258 IPR001841 -
Vivi165g00020 525 SMART ibrneu5 281 353 IPR002867 GO:0008270
Vivi165g00020 525 SMART ibrneu5 363 422 IPR002867 GO:0008270
Vivi165g00020 525 FunFam RBR-type E3 ubiquitin transferase 209 294 - -
Vivi165g00020 525 Pfam Reverse transcriptase-like 84 183 IPR002156 GO:0003676|GO:0004523
Vivi165g00020 525 CDD BRcat_RBR_unk 295 356 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi165g00020 66 413 C3H Transcription Factor Family AT2G19610 26.446 1.37e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi165g00020 - - vvo:131622490 987.638