LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1655g00003	ATGGCAACTCAAAAACGTCCAGATTTTCATAGAGCAATAATGCAGAGTAAACAACTTAGACTTCCCAAGTTTTATGCCAAAAATTATTGGAATGGAACTCCTAATCCAATATTTCTCATACTTCCGAATGGTATTCAACAAAAAATATTTTGGGAAGAACGTGATGGTGATATTTGGTTTCAGAAAAATTGGGAAGATTTTGCAAAGTTTTTAGATATTGGATATTTATTAACTTTTAAATATATTGGTGGATCATATTTCAAAGTTAAGATATTTAATCAAATTTGCTTAGAAATGAATTATTCTATCATAAGATGTGTAAATGAAGATAGGGAAAGTAAAGAGGGACCTAAAGAAACTGTTGAACTGAGTGATGAGAGTTTAAATGAGGTTGAAGAACTTGCACAAACTAGAAGGAGGAAAATTAACAAAAGAAAAAGGAAAGTTGATTCAGATTTGAATACTGCTCAGCCAAAAATTTTAGATGAAGTTGCTGGAAGTAAAGAAGGAGTTAAAGGAACTCGTGAACTGAGAGATGAAAGTTTGGATGAGAGTGAGCAACATAAGCAAACTGAAAGGAGAAAGAATAACAAAAGAAAAAGAAAAGTTGCTACCCAACCAAAAATTTCAGGTAGAAAAAGAAAAGACATAGTTAAGGAAGTTAACAACAATAGTCCATACTTTGAAGTTACACTAAAACCATCCTATGCTAAAGGCTATATGTTGAGGATTCCAATAGTGTTTACGAGAAAATATTTCAGAAAGAGTGAAAGAAAAGCAATGTTAAAGTTTGAGAATGACATGGCTATGGAAGTGATTATCGAGTATAATAATGACAACGGAGGATTTAGTATGAAACGTGGTTGGAAGAAATTTACAGATAAATATAATTTAAAAATTGGTGATGTTTGTAAATTTGTGATGACATCAGATCAACCACTTTCGTTTTCTGTTACTTTTACTCGAGTAAGAAAGGAAAAGAAACTTAAGAAGTTTTTAGGTGTATCTTTAAGTGATAGTACAGTTGCAAAGAAAAAAAGTGTGGGAGAAACTTCTAGAGGAAGACCAAAAGGTTCAAAAAGTTGTAATGTGATAAATTCGTCATTTAAGCTTTTTGTAAATTGCCTGTATCCGAAATTTCCAAAAAAATTTATGGATGGGCCAAAAAAAATCGTAAAGCTGAAAATGAAAGAAGAATCATGGTTGGTAAAAGTTAATTATTATCATAGTATCCAGGGATGGAGATTCAGTGGAGGTTGGTTAAAGTTTAGGAAAGATTGTATGGTGGAGATAGGAGATACCTGTCTCTTTGAATTAACTGATAACAAAAACATGGTGTTTGATGTTTCATTTGTAGAAAAGAACACATGA	1371	0.3158	MATQKRPDFHRAIMQSKQLRLPKFYAKNYWNGTPNPIFLILPNGIQQKIFWEERDGDIWFQKNWEDFAKFLDIGYLLTFKYIGGSYFKVKIFNQICLEMNYSIIRCVNEDRESKEGPKETVELSDESLNEVEELAQTRRRKINKRKRKVDSDLNTAQPKILDEVAGSKEGVKGTRELRDESLDESEQHKQTERRKNNKRKRKVATQPKISGRKRKDIVKEVNNNSPYFEVTLKPSYAKGYMLRIPIVFTRKYFRKSERKAMLKFENDMAMEVIIEYNNDNGGFSMKRGWKKFTDKYNLKIGDVCKFVMTSDQPLSFSVTFTRVRKEKKLKKFLGVSLSDSTVAKKKSVGETSRGRPKGSKSCNVINSSFKLFVNCLYPKFPKKFMDGPKKIVKLKMKEESWLVKVNYYHSIQGWRFSGGWLKFRKDCMVEIGDTCLFELTDNKNMVFDVSFVEKNT	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1655g00003	456	MobiDBLite	consensus disorder prediction	172	192	-	-
	Vivi1655g00003	456	CDD	B3_DNA	226	322	IPR003340	GO:0003677
	Vivi1655g00003	456	Gene3D	-	210	326	IPR015300	-
	Vivi1655g00003	456	Gene3D	-	331	455	IPR015300	-
	Vivi1655g00003	456	ProSiteProfiles	B3 DNA-binding domain profile.	399	455	IPR003340	GO:0003677
	Vivi1655g00003	456	SUPERFAMILY	DNA-binding pseudobarrel domain	222	318	IPR015300	-
	Vivi1655g00003	456	MobiDBLite	consensus disorder prediction	172	215	-	-
	Vivi1655g00003	456	CDD	B3_DNA	380	451	IPR003340	GO:0003677
	Vivi1655g00003	456	Gene3D	-	1	96	IPR015300	-
	Vivi1655g00003	456	SMART	B3_2	228	326	IPR003340	GO:0003677
	Vivi1655g00003	456	SMART	B3_2	372	455	IPR003340	GO:0003677
	Vivi1655g00003	456	SMART	B3_2	9	95	IPR003340	GO:0003677
	Vivi1655g00003	456	SUPERFAMILY	DNA-binding pseudobarrel domain	369	452	IPR015300	-
	Vivi1655g00003	456	Pfam	B3 DNA binding domain	228	319	IPR003340	GO:0003677
	Vivi1655g00003	456	SUPERFAMILY	DNA-binding pseudobarrel domain	5	93	IPR015300	-
	Vivi1655g00003	456	ProSiteProfiles	B3 DNA-binding domain profile.	227	324	IPR003340	GO:0003677
	Vivi1655g00003	456	PANTHER	B3 DOMAIN-CONTAINING	3	196	-	-
	Vivi1655g00003	456	MobiDBLite	consensus disorder prediction	193	208	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1655g00003	339	450	B3 DNA Binding Superfamily	AT3G18990	26.829	8.89e-06	45.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Vivi1655g00003		B3	6.7e-12	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1655g00003	-		-	vvo:131642494	922.154