Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1655g00001 ATGGCAACTCAACAGCGTCCCAGTTTTCATAGAGTAATAATGAAGAATAAACAACTGAGAATTCCAAAATCATATGTTAACAAATATTGGAATGGAACTTCAAATCCAATATTTCTTAGACTTCCAAATGGTGTTCAACAGAAAATATTTTGGGTAGAGCGTGATGGAGATATTTGGTTTGATAAAAATTGGGAAATTTTTGCTAAGAATTTTAATTTTGCATATTTCTTAACTTTTAAATATATAGATGAATCACACTTCAAAGTTAAGATATTTAATCGAAGTTGTTTAGAAATAAATTATTCTGATATAAGATGTGTAGATGAGGTTGATGAGAGTTTAGATGAGAGTGAAGAAGTTGCACTACCTAAAAAGAAAAAAAGTAACAAAAGAAAAAGAGAAGTTGATTCAGATTTGAATACTACCCAACCAAAACATGCAGGTAAAAAGAGATATGCTATTAATGGGAGGGCTAATAATGATAGTCCATATTTTGAAGTTACACTGAAACCATCTTACGCTAAAGGCTATACGTTGAGGATTCCAGTAGTGTTTTCGAGAAAATATTTCAAAAAGAGTGCAAGAAAAGCAATGATAAAATTTGAGAATGACATGGCTATGGAAGTGAATATTGAGTATAATGATGACAATGGAGGATTTAGTATGAAACGTGGTTGGAAGAAATTTACAGAAAAATATAATTTAAAAATCGGTGATGTTTGTAAATTTGTGATGACTCAAGATCAACCACTTTCATTTTCTATTACCATTAATCGAGTCAGAAAGGAGAAGAAACATAAAATGTTTTCAGGTGTATCTTCTAGTGATACTACCGTTGCAAAGAAAAAAAGTGTGGGAGAAACTTCTAGAGGAAGATCAAAAGGTTCAAAAAGTCGTAATGTGATGAACTCGTCATTTAAGCTTCTTGTGAATTGTTTATATCCGAATGTTCCAAACGAGCTTATGAATAGGCCAAAACAAATTGTAAAGCTGAAAATGAAGGAAAAATTATGGTTGGTAAAAGTTAATTATTATCCTAGTATCAAGCGATGGAGATTAAGTGGAGGTTGGTCCAAGTTTAGAAAAGATTGTAGGGTGGAGATAGGAGATACCTGTCTCTTTGAGTTAAGAGATAAACAAAACATGGTGTTTGATGTTTCATTTGTAGGAAAGAATGCATGA 1182 0.3164 MATQQRPSFHRVIMKNKQLRIPKSYVNKYWNGTSNPIFLRLPNGVQQKIFWVERDGDIWFDKNWEIFAKNFNFAYFLTFKYIDESHFKVKIFNRSCLEINYSDIRCVDEVDESLDESEEVALPKKKKSNKRKREVDSDLNTTQPKHAGKKRYAINGRANNDSPYFEVTLKPSYAKGYTLRIPVVFSRKYFKKSARKAMIKFENDMAMEVNIEYNDDNGGFSMKRGWKKFTEKYNLKIGDVCKFVMTQDQPLSFSITINRVRKEKKHKMFSGVSSSDTTVAKKKSVGETSRGRSKGSKSRNVMNSSFKLLVNCLYPNVPNELMNRPKQIVKLKMKEKLWLVKVNYYPSIKRWRLSGGWSKFRKDCRVEIGDTCLFELRDKQNMVFDVSFVGKNA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1655g00001 393 Gene3D - 1 96 IPR015300 -
Vivi1655g00001 393 MobiDBLite consensus disorder prediction 268 300 - -
Vivi1655g00001 393 SUPERFAMILY DNA-binding pseudobarrel domain 4 96 IPR015300 -
Vivi1655g00001 393 Pfam B3 DNA binding domain 325 384 IPR003340 GO:0003677
Vivi1655g00001 393 Pfam B3 DNA binding domain 165 257 IPR003340 GO:0003677
Vivi1655g00001 393 SUPERFAMILY DNA-binding pseudobarrel domain 320 384 IPR015300 -
Vivi1655g00001 393 ProSiteProfiles B3 DNA-binding domain profile. 164 261 IPR003340 GO:0003677
Vivi1655g00001 393 ProSiteProfiles B3 DNA-binding domain profile. 338 392 IPR003340 GO:0003677
Vivi1655g00001 393 CDD B3_DNA 321 388 IPR003340 GO:0003677
Vivi1655g00001 393 CDD B3_DNA 163 259 IPR003340 GO:0003677
Vivi1655g00001 393 MobiDBLite consensus disorder prediction 121 145 - -
Vivi1655g00001 393 SMART B3_2 305 392 IPR003340 GO:0003677
Vivi1655g00001 393 SMART B3_2 9 95 IPR003340 GO:0003677
Vivi1655g00001 393 SMART B3_2 165 261 IPR003340 GO:0003677
Vivi1655g00001 393 Gene3D - 143 263 IPR015300 -
Vivi1655g00001 393 Gene3D - 282 392 IPR015300 -
Vivi1655g00001 393 MobiDBLite consensus disorder prediction 121 146 - -
Vivi1655g00001 393 SUPERFAMILY DNA-binding pseudobarrel domain 159 249 IPR015300 -
Vivi1655g00001 393 PANTHER B3 DOMAIN-CONTAINING 3 131 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1655g00001 6 260 B3 DNA Binding Superfamily AT3G18990 25.074 4.89e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1655g00001 B3 7.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1655g00001 - - vvo:131638761 739.954