Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1653g00002 ATGGCTGCGGTGATCAACGAAATGCCTAAAAGAAAGAAGGAGCAACATCATGATGATGATAATGTCTCATTGTCACATAATATTAAGAAACCTCGTCGTGTGGTTTGGTCTGATGATCTTCATGCAAAGTTTGTTGATGCTGTTAACCTTATTGGCATTTCAAATTCAAAGGTTGTTCCGAGTAAAATAGTTGCTTTAATGAATGTTGATGGAATTACTACTGCTCATGTCGCTAGCCATCTCCAGAAATATAGACACAAAAAGAAAAAGGCTGAACATGAAGCTGATAGAGATAGGGTTCCTTCAACACTCATTCAACCTACTCAATCTCAAAACATCATCCACATGAGTGGAGTTACTCCTTCAACACTAATTCAATCTCAAAATATCAACATCCATCCACCACCATCCACTTTTCCTACATATCATTACACCTCTAGTCTTCCAACTCCACTTGGATTTCCAACAACCTTCCACGACTTCCATGGATCATCTGCTTCTTCAACACCTATTCAACCTATTCCTTCTCAAACTATCAACACCTCGTCGTCAATCATCCATCCACCACCGTACAAGTCTCCAATATATCATCAAAGCCCTACTTTTCCAACTGATGTTAACCAATCTACAACTCTACTTGGATTTCCAACAACATCCCACTTCCATGATGACATTAGGGCTACTAACTGCCGTTTTGTTGGACCTTCTTCAAAAAGCACAAGAAGCATTTCGGATTATGATTCTTGGGATTATGATCTCAGAAGGGAACCTCAGCTACTTCCGTTTCCCCACAATTCTTTGCCGGTATTGGAGTCTCACAAAACAAGTCAAAATAGTCCAATGAAGAATTCACAGCAGGCACATAATGTAGAGCCAATTATTGTTGGATCATCTGCTTCTTTGGAAGGCACAAACTATAATCTGCGGAATGATGATAGTTTTATTGACTTTTCGGTTGAAGAAACAGATCCTCAGACTTTAGAAGACATTAGAAAGATGGGGGAAGGCATAGAAGATGATGATCTCATGAACTCTTGGAAGCGCTTTCTAGAAGAGGATGTCACTAATGTTATGTGA 1077 0.3946 MAAVINEMPKRKKEQHHDDDNVSLSHNIKKPRRVVWSDDLHAKFVDAVNLIGISNSKVVPSKIVALMNVDGITTAHVASHLQKYRHKKKKAEHEADRDRVPSTLIQPTQSQNIIHMSGVTPSTLIQSQNINIHPPPSTFPTYHYTSSLPTPLGFPTTFHDFHGSSASSTPIQPIPSQTINTSSSIIHPPPYKSPIYHQSPTFPTDVNQSTTLLGFPTTSHFHDDIRATNCRFVGPSSKSTRSISDYDSWDYDLRREPQLLPFPHNSLPVLESHKTSQNSPMKNSQQAHNVEPIIVGSSASLEGTNYNLRNDDSFIDFSVEETDPQTLEDIRKMGEGIEDDDLMNSWKRFLEEDVTNVM 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1653g00002 358 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 299 IPR044841 GO:0003700|GO:0006355
Vivi1653g00002 358 FunFam Two-component response regulator 27 92 - -
Vivi1653g00002 358 SUPERFAMILY Homeodomain-like 30 90 IPR009057 -
Vivi1653g00002 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 89 IPR017930 -
Vivi1653g00002 358 Gene3D - 28 91 - -
Vivi1653g00002 358 MobiDBLite consensus disorder prediction 7 24 - -
Vivi1653g00002 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 88 IPR006447 GO:0003677
Vivi1653g00002 358 MobiDBLite consensus disorder prediction 1 24 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1653g00002 10 85 Response Regulator Gene Family AT3G16857 55.128 3.67e-16 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi1653g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1653g00002 - K14491 vvo:131604558 364.385