Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1652g00005 ATGGCAGGAATGCTCCCTGGTGTTGAATCTGCTAGAAGGAGACGTGTCCATAAGGCTGGAGTTGAACCTTCTAATAACAGACGCTCTTCTTTCTGTTTGTATTCCAGTAATTCTGAATCTCGTCTTTCCTCGTCTTCTTCAATGCAAAGAAACATGTTATACCAGACACAGCAAGATGAGAATCTGGTAGGAGCAGCAAGAGAAGCTAAACAAAGATTGGATGACAAATTCAGATCCCAAACGGTATCAGAAAACACAAGGAAGAAGAACATAAAGTGTGTGGAGGGCAGAAAAGAAATCATAGAGGAGTTACAAATTGAGGTGTATCGTTCAAAGAAAAGTGGGCCAAGGAAATTCAGTTGGAGCAAATTGAGCTGGAAAGCATCAGAACAAGAGGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGAGAGAAATTGATTCCTCTACCTTGTGCTCACAAGTTTCATTCTACATGCTTGAAACCATGGTTGGAAAATAACTCACACTGTCCATGTTGTAGAACTACCATTCTTTTTCTCTAG 546 0.4029 MAGMLPGVESARRRRVHKAGVEPSNNRRSSFCLYSSNSESRLSSSSSMQRNMLYQTQQDENLVGAAREAKQRLDDKFRSQTVSENTRKKNIKCVEGRKEIIEELQIEVYRSKKSGPRKFSWSKLSWKASEQEDCAVCLESFKIGEKLIPLPCAHKFHSTCLKPWLENNSHCPCCRTTILFL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1652g00005 181 ProSiteProfiles Zinc finger RING-type profile. 134 175 IPR001841 -
Vivi1652g00005 181 Pfam Ring finger domain 133 175 IPR001841 -
Vivi1652g00005 181 PANTHER SI:CH211-59O9.10 13 179 - -
Vivi1652g00005 181 MobiDBLite consensus disorder prediction 1 32 - -
Vivi1652g00005 181 SMART ring_2 134 174 IPR001841 -
Vivi1652g00005 181 FunFam Zinc finger family protein 108 179 - -
Vivi1652g00005 181 CDD RING-H2_PA-TM-RING 133 175 - -
Vivi1652g00005 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 178 IPR013083 -
Vivi1652g00005 181 SUPERFAMILY RING/U-box 123 180 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1652g00005 43 178 C3H Transcription Factor Family AT1G49850 29.487 4.64e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1652g00005 - - vvo:131599132 336.65