Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi164g00009 ATGTGCAGTGGTCCTGACAAATCAAAATCTCGTTCAACTTCTTCATCTTCATCTGCGGAAGAAGGTTCAAATAACATCAAAGACATGAAAAATCTAACAGTTCATACCGATGATTCTTTTTCCAATCTGCTTGAACTTGCTTCTAACAATGATTTTGAAGAATTTAAGGTAGCTATAGCCAGCAATGTCTCTTTAATAAATGAAGTTGGCTTCTGGTATGTCCGTCAAAAGGGGTCTAAACAAATTGTTCTTGAGCACAGAACCCCTTTAATGGTGGCTGCATCCTATGGAAGTGTTGATATTCTTAAGCTTGTACTCTCATGTCCAGAGGCTGATGTAAATTTTGCTTGCGGTAATGATAAAAGCACTGCTCTTCACTGTGCTGCTTCAGGTGGTTCGGTTAATGCAGTTGATGCTGTTAAACTGCTTTTATCCGCTGGTGCAAATATCAACTGTGTGGATGCTAATGGAGACCGTCCAGTTGATGTTATTGTTGTTCCACCTAAGCCTGGAGGTGTGAAAACAATTCTTGAAGAACTACTTGCAGATAGTGATTCTGACAGCTCTGTAGATGGTTGTTCTCTTCCATTATCTGTTAATTCATCAAGTCCTCGTTCAGCTGCCCCCTTATCATCAACTGAAAATGGGTCTCCATCCTCTCCTATGGCTCCAAAGTTTACTGACGCAGCTGTTAACTCTGCCTCTGAAAAGAAAGAATATCCAATTGATCCGTCACTTCCTGATATAAAAAACAGCATATATGCCACAGATGAATTTCGTATGTTTTCATTCAAGGTTCGCCCTTGTTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTAGAAGGAGAGACCCCAGAAAGTTTCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGCAGACGTGGAGATATGTGTGAATATGCCCATGGAGTATTCGAGTGCTGGCTACACCCTGCTCAGTATCGGACAAGGCTCTGCAAAGATGGTACTAGTTGTAATCGAAGGGTGTGTTTTTTCGCTCACTTACCTGAAGAGCTGCGTCCCTTGTACGTGTCCACTGGATCTGCTGTTCCTTCACCCCGGTCAGCAGCATCTGCTCCTAATGTCATGGACATGGCTGCTGCTATGAGCCTTTTTCCTGGTTCACCATCATCAATGTCTCCCATGTCTCCATCTCCCTTTGCACAGCCGATATCTCCATCTGCAAATGGCATGTCTCACTCAAACAATCCTTGGCCACAGCCAAATGTGCCAGCACTTCACTTACCTGGAAGCAATATTCAAACTAGTCGTTTGAGATCTTCTCTTTGTGCCCGAGATATGCCACTTGAAGACTTCAACAATATGATGCAAGACTTCGATGGTCAGCAGCACATACTAAATGACATGAGCTGTTTCTCACAGCCCCGTCCTGGTGCCATATCAGTGAGCCGATCCGGTCGGTCTAAAACACTAACTCCATCAAATCTTGAGGATCTATTTTCTGCTGAAGTTTCTTCATCTCCTCGGTATTCCGACCCAGCAGCTGCTTCTGTATTTTCTCCAACACACAAATCAGCTGTCTTCAACCAGTTTCAACAGCTCCAAAGTTCACTATCACCCATAAATACAAATGTTATGTCACCTAAGAATGTTGAGCATCCTCTATTCCACCAGGCTCCATATGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGCATGGATCCCCTCTCTCCAATGAATTCTCGATTGTCTGCATTTGCTCAGCGGGAGAAGCAGCAGCAACAGATGCGGAGCCTCAGTTCAAGAGAACTCGGCGCTAACAACCCCGTCTCGGCTGTCGGGTCTCCAGTCAACTCCTGGTCTAAGTGGGGATCCCCTACCGGAAAAGCCGATTGGTCAGTAAATGGAAATGACTTTGGTCGATCTCAAAGATCCACACCTTTTGAACATGGAAACAACGGAGAAGAGCCTGATCTATCATGGGTCCAATCCCTCGTCAAGGAATCTCCACCTGAGATAAAAGAGAAGCGTGCAGTTTCTGGCCCTATTCCATCTGCTGAACTGAATTCCAATCCTCAAGTAGAGTCTACTGATCATTCGGTTTTAGGAGCTTGGCTGGAGCAAATGCAGCTGGACCAACTTGTGGTCTAG 2175 0.4492 MCSGPDKSKSRSTSSSSSAEEGSNNIKDMKNLTVHTDDSFSNLLELASNNDFEEFKVAIASNVSLINEVGFWYVRQKGSKQIVLEHRTPLMVAASYGSVDILKLVLSCPEADVNFACGNDKSTALHCAASGGSVNAVDAVKLLLSAGANINCVDANGDRPVDVIVVPPKPGGVKTILEELLADSDSDSSVDGCSLPLSVNSSSPRSAAPLSSTENGSPSSPMAPKFTDAAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHLPEELRPLYVSTGSAVPSPRSAASAPNVMDMAAAMSLFPGSPSSMSPMSPSPFAQPISPSANGMSHSNNPWPQPNVPALHLPGSNIQTSRLRSSLCARDMPLEDFNNMMQDFDGQQHILNDMSCFSQPRPGAISVSRSGRSKTLTPSNLEDLFSAEVSSSPRYSDPAAASVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPKNVEHPLFHQAPYGVSSPGRMSPRSMDPLSPMNSRLSAFAQREKQQQQMRSLSSRELGANNPVSAVGSPVNSWSKWGSPTGKADWSVNGNDFGRSQRSTPFEHGNNGEEPDLSWVQSLVKESPPEIKEKRAVSGPIPSAELNSNPQVESTDHSVLGAWLEQMQLDQLVV 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi164g00009 724 SMART c3hfinal6 298 324 IPR000571 GO:0046872
Vivi164g00009 724 SMART c3hfinal6 333 356 IPR000571 GO:0046872
Vivi164g00009 724 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 323 IPR000571 GO:0046872
Vivi164g00009 724 ProSiteProfiles Ankyrin repeat region circular profile. 120 154 - -
Vivi164g00009 724 MobiDBLite consensus disorder prediction 185 226 - -
Vivi164g00009 724 Pfam Ankyrin repeats (3 copies) 77 154 IPR002110 GO:0005515
Vivi164g00009 724 SUPERFAMILY Ankyrin repeat 33 177 IPR036770 -
Vivi164g00009 724 FunFam Zinc finger CCCH domain-containing protein 66 256 324 - -
Vivi164g00009 724 MobiDBLite consensus disorder prediction 187 222 - -
Vivi164g00009 724 SMART ANK_2a 120 152 IPR002110 GO:0005515
Vivi164g00009 724 SMART ANK_2a 85 115 IPR002110 GO:0005515
Vivi164g00009 724 PANTHER UNKEMPT FAMILY MEMBER 45 677 IPR045234 -
Vivi164g00009 724 Gene3D - 299 361 - -
Vivi164g00009 724 ProSiteProfiles Ankyrin repeat profile. 120 155 IPR002110 GO:0005515
Vivi164g00009 724 MobiDBLite consensus disorder prediction 563 666 - -
Vivi164g00009 724 Gene3D - 5 166 IPR036770 -
Vivi164g00009 724 MobiDBLite consensus disorder prediction 679 702 - -
Vivi164g00009 724 MobiDBLite consensus disorder prediction 1 30 - -
Vivi164g00009 724 ProSiteProfiles Zinc finger C3H1-type profile. 303 325 IPR000571 GO:0046872
Vivi164g00009 724 MobiDBLite consensus disorder prediction 582 658 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi164g00009 1 721 C2H2 Transcription Factor Family AT5G12850 53.763 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi164g00009 Ank_2 7.7e-11 CL0465