Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi164g00008 ATGGCAGCAGCGCGAGAATTTTCCGCAGCGGTGTTCTCTTGCTCAAAGCTTCACGCTTCACTTTTTCAACGTCTCTTCCTTCGTAGAAAGAGTTCCAAGGTTTTTGTCAAAGGTTTAGCATTTTCTACTACAGAGGAGAAATTAGCAGAAGCTTTTTCTCAATATGGAAATGTCCTCAAAGCTGATATAGTATTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTTCAGAGGAGGAAGAAGCCCGCAAAGCACAGATTGACATGAATGGAAAGATATTACACGGGCGTGTGTTATATGTAGACATGGATTCACCTGACGAGCAGAAGAAAACTTACAAGCATGCAACTAAAACTACAAATGCTGATGATGATAGTGCATATGAATTGAAGTAG 408 0.3971 MAAAREFSAAVFSCSKLHASLFQRLFLRRKSSKVFVKGLAFSTTEEKLAEAFSQYGNVLKADIVLNKAKNRSKGFGYVTFSEEEEARKAQIDMNGKILHGRVLYVDMDSPDEQKKTYKHATKTTNADDDSAYELK 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi164g00008 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Vivi164g00008 135 SUPERFAMILY RNA-binding domain, RBD 29 114 IPR035979 GO:0003676
Vivi164g00008 135 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 113 - -
Vivi164g00008 135 SMART rrm1_1 33 106 IPR000504 GO:0003723
Vivi164g00008 135 MobiDBLite consensus disorder prediction 114 135 - -
Vivi164g00008 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Vivi164g00008 135 Gene3D - 25 132 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi164g00008 26 120 Eukaryotic Initiation Factors Gene Family AT1G22760 35.789 1.05e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi164g00008 - K13195 gmx:100527061 157.147