Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1640g00001 ATGGAGGATATATTGGCGAGGGCGAAGTACGCGGTGGTGGAGAATGAGGATTACGGTAGCCTCATGTGTGAGCAATGTGGCACCGGGGAGCAGCCGGAGGAGCTGCTGTTGTGCGACAAATGTGACAAAGGATTCCATATGAAATGTGTGAGGCCGATTGTTGTGAGGATTCCGATTGTTTCTTGGATTTGCCCTAAGTGTTTAGGGGTGAAGAAAGTGAAAAAGTTCACGCAAAGGAGAATACTTGATTTCTTCGGGCTTCCAAGGAATTTGCCTGATTTCAGAAGGAATAATTCTTCTTCTCGGGGTACTATGTGA 318 0.4686 MEDILARAKYAVVENEDYGSLMCEQCGTGEQPEELLLCDKCDKGFHMKCVRPIVVRIPIVSWICPKCLGVKKVKKFTQRRILDFFGLPRNLPDFRRNNSSSRGTM 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1640g00001 105 ProSiteProfiles Zinc finger PHD-type profile. 20 70 IPR019787 -
Vivi1640g00001 105 Pfam PHD-finger 22 67 IPR019787 -
Vivi1640g00001 105 SMART PHD_3 22 68 IPR001965 -
Vivi1640g00001 105 ProSitePatterns Zinc finger PHD-type signature. 23 67 IPR019786 -
Vivi1640g00001 105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 81 IPR013083 -
Vivi1640g00001 105 PANTHER PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN 1 18 67 IPR047157 -
Vivi1640g00001 105 SUPERFAMILY FYVE/PHD zinc finger 12 76 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1640g00001 22 75 C2H2 Transcription Factor Family AT3G01460 37.037 1.12e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi1640g00001 PHD 1.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1640g00001 K24406 - vvo:131642456 209.534