Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi162g00006 ATGGTAATTTTTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATATCGAAGTAAAAATTGACAATACAGGTATCGTACTTCAAGTAGGCGATGGCATTGCTCGTATTTTTGGTCTTAATGAAGTAATGGCAGGTGAATTAGTAGAATTTAAAGAGGGTACAGTAGGCATTGCTTTGAATTTGGAATCAAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTCATGATACAAGAGGGAAGTTCCGTAAAAGCAACAGGAATAATTGCTCAGATACCAGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGACGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAATCGAATCTCCCGCTCCCGGTATTATTTCCAGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATAGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTGATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCTACAGATACGATTCTCAATCAACAGGGACAAAATGTAGTATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTAGTAAATACTTTACAAGACAGAGGAGCAATGGAATACACTATTATAGTGGCTGAAACAGCAAATTCCCCAGCTACATTACAATACCTCGCGCCTTATACCGGAGCAGCTCTGGCTGAATATTTTATGTATCGTGAACGTCACACTTTAATCATTTATGATGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCTTATCCCGGAGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTATTATCTGCTGATTTATTCAATGCTGGGATCAGACCTGCAATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATAAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCTCTTCAGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGTCGACGATTGCACGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACTGTGGAAGAATAG 1302 0.3963 MVIFRADEISKIIRERIEQYNIEVKIDNTGIVLQVGDGIARIFGLNEVMAGELVEFKEGTVGIALNLESKNVGVVLMGDGFMIQEGSSVKATGIIAQIPVSEGYLGRVVNALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVVCVYVAIGQKASSVAQVVNTLQDRGAMEYTIIVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQILLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLARGRRLHELLKQSQSAPLTVEE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi162g00006 433 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 150 365 IPR000194 GO:0005524
Vivi162g00006 433 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 94 IPR036121 GO:0046034|GO:1902600
Vivi162g00006 433 Hamap ATP synthase subunit alpha [atpA]. 1 433 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vivi162g00006 433 CDD F1-ATPase_alpha_CD 95 368 IPR033732 GO:0032559
Vivi162g00006 433 NCBIfam F0F1 ATP synthase subunit alpha 5 433 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vivi162g00006 433 FunFam ATP synthase subunit alpha 95 372 - -
Vivi162g00006 433 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 93 IPR004100 GO:0046034|GO:1902600
Vivi162g00006 433 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 373 433 - -
Vivi162g00006 433 CDD ATP-synt_F1_alpha_N 28 93 - -
Vivi162g00006 433 FunFam ATP synthase subunit alpha 2 94 - -
Vivi162g00006 433 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 3 433 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vivi162g00006 433 CDD ATP-synt_F1_alpha_C 376 433 IPR000793 GO:0015986
Vivi162g00006 433 Gene3D - 373 433 IPR038376 -
Vivi162g00006 433 ProSitePatterns ATP synthase alpha and beta subunits signature. 356 365 IPR020003 GO:0005524
Vivi162g00006 433 Gene3D - 3 94 IPR023366 -
Vivi162g00006 433 Pfam ATP synthase alpha/beta chain, C terminal domain 372 433 IPR000793 GO:0015986
Vivi162g00006 433 Gene3D - 95 372 IPR027417 -
Vivi162g00006 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 371 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi162g00006 33 371 Primary Pumps ATPases(2) AT4G38510 29.330 6.46e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi162g00006 K02111 - gmx:3989298 765.377