Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi162g00003 ATGGCGATCCATTTATCCAAAACTGCTACTAGCCCGAGCACACGCAATGGAGCCGTAAACAGTCAAGTGAAATCCAATTCACGAAACTGTTTGATTTCTGGACAGCATCATTGTGGTAAAGGGCGTAATGCCAGAGGAATAATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGCAATGAAAAAGACATCTATGGTAGAATCGTAACTATAGAATACGACCCTAATCGAAAAGCACACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTAGAATTGGAGATACCGTTGTTTATGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTTATTGCAAAAGAGGGTAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGCGAGGCAGGCGGCCTGTAGTAAGAGGGGTAGTTATGAACCCTGTAGATCATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG 840 0.4357 MAIHLSKTATSPSTRNGAVNSQVKSNSRNCLISGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRKAHICLIHYGDGEKRYILHPRGARIGDTVVYGTEVPIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRWRGRRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRTRKRNKYSDNLILRRRSK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi162g00003 279 NCBIfam 50S ribosomal protein L2 10 278 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vivi162g00003 279 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 16 279 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vivi162g00003 279 SUPERFAMILY Nucleic acid-binding proteins 11 124 IPR012340 -
Vivi162g00003 279 SMART Ribosomal_L2_C_2 123 256 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vivi162g00003 279 Pfam Ribosomal Proteins L2, RNA binding domain 41 116 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vivi162g00003 279 ProSitePatterns Ribosomal protein L2 signature. 221 232 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vivi162g00003 279 PANTHER RIBOSOMAL PROTEIN L2 37 278 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vivi162g00003 279 Gene3D - 117 199 IPR014722 -
Vivi162g00003 279 Hamap 50S ribosomal protein L2 [rplB]. 1 278 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vivi162g00003 279 MobiDBLite consensus disorder prediction 227 279 - -
Vivi162g00003 279 FunFam 50S ribosomal protein L2, chloroplastic 117 199 - -
Vivi162g00003 279 SMART Ribosomal_L2_2 41 117 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vivi162g00003 279 SUPERFAMILY Translation proteins SH3-like domain 126 276 IPR008991 -
Vivi162g00003 279 FunFam 50S ribosomal protein L2, chloroplastic 1 113 - -
Vivi162g00003 279 FunFam 50S ribosomal protein L2 199 279 - -
Vivi162g00003 279 MobiDBLite consensus disorder prediction 263 279 - -
Vivi162g00003 279 Gene3D Ribosomal protein L2, domain 3 200 278 IPR014726 -
Vivi162g00003 279 MobiDBLite consensus disorder prediction 1 25 - -
Vivi162g00003 279 Gene3D - 22 116 IPR012340 -
Vivi162g00003 279 Pfam Ribosomal Proteins L2, C-terminal domain 124 254 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi162g00003 52 238 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 35.678 3.60e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi162g00003 K02886 - cave:30215299 488.419