Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi162g00001 ATGTGTATTCGAATCATAGGAGCTAGTAATCGACGGTATGGTTATATTGGTGACATTGTTGTTGCTGTAATCAAAAAAGCAGTGCCAAATTCATCTGTAGAAAGATCTCAAGTCATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTAAAACGTCGTAATGGTATAATAATAAAGTATGATGATAATGCGGCGGTTCTCATTGATAAAGAAGGAAATCCAAAAGGAACTCGAATTTTTTCCGCAATAGCCCGAGAATTGAGACAGTTCAATTTCACTAAAATAGTTTCATTAGCACCCGAGATAGAGATTTTATTGAATCAAAAAATCAAAAAACGGGAGCACGTTGATTATATCGAAAGTAAGGAGAAAAAATCGATTGTGGGTAAAGATACTATCGCTGATATACTAACCTTGATACGCAATGCTGACATGAATAGAAAAAGAACTGTTAAAATACCACTTACTAATACCACCGAAAACATTGAGGAACAATTGAAAGTTAAAAATGGTTTGATGACCAAACCACGAAGGGGTGTCGGCCGGCCGAAAAAATTGGCGGTGGCGCTCCAACGCACGGCAGAAAGAACCATCGTGACTCAAGCAACCATAGAACTAGCTCCCGCGAGCTCAGAGACCTCTTTGAAGATACCAGAGAAGACTGAAGAACCCTCTCCAAAAGAAGATGACCCTCCTTCAACGGAGACGATTCCAACGAACCCTAAACCTTGGGTGGAGATCATCCAAGGTAATCGAGATGTGTCCAGGGGAATGGCTGTGGATTTCATAGCACCTAACATTGTCAATGGAGAAATTGAAATTGCAATTGAGGAAGATGATGTTGCTCAGGAAATTGAATATTGGGAAAATGCAATAATCCTTTTTGCGCTGGGTGAAATACTTTCGATGCACGCCGTGAAGAAGTTTATGGAGAAGACTTGGAATTTTGTTGGCCTACCCGAGTTGTACTACAACGATGCTGGCTACTTCATTGTTCGATTTAGGAATTATGAAGATATGGAGAAAGTCATGGCTCAGGGACCTTACTTTATCTACGGTAAACCTCTTTTCCTTAAACATTGGTCTGAAAATTTTGAGATTAAAGAGGATTTACTTCGCATTCTGCCATTATGGATTACTCTGCCCAACCTTCCACTATACCTTTGGGGGAAACGTAGTATCTCCAAAATTACTAGTGCTATAGGCAAGCCAATTACCACTGATGAATGCACCGCTAAGAAGCTACGTATTTCGTATGCTAGGGTGTTAGTAGAAGTTGATATTACACAGAAATTGAGAGATTCTATAACCATTAAGGACCATACTGGTAAGATGATTGAACAACAGATTGTGTACGAATGGAAGCCGAGTTATTGTCACTCCTGCCTTAAGATAGGGCATGACTGTGCAACACAAAAAACTGGGAAGCAGAAAAAAGTGTGGCAACCGAAACCACCTGTGCAAGAAAAGAAGGAGGAAGATGTGCCAATGCCTATTATTCCTGAAAAAGAACCAAACCCTACAGAAAAGACTGACTGGAAGTTGGTGACTTCTAAGGGGGACAGAGGAAAAAGACCAATAAACAGCACTCCTACACAGCTACAGATATGGGAATTCCAAAATCCCTTTACTCCCTTAAGGACTGGAGAAAATCCTGCAGGGGAGCATAGTGGAGGATTGCCTATAATTGCATTGCTTGAGACGAGGGTCAAGAAGCATAATGCAGAGGGAATAAGAAAGCAGTTGGGAGCTAAATGGCAATTCGTGGATAATTATGCCCATCATGATAATGGAAGAATTTGGCTCATGTGGATGGATAATTTGGTCAGTGTGAATGTCCTTCAGATGGGTGATCAATACATTCATGCCGAGCTTGAAAAGAGGAAAATCCTGTGGAACACTATTGAGAATTTGGGCACCAACCTGCACACCCCTTGGATTGTCATGGGGGACTTCAATAATGTCATCAATAGCCAAGGTAGAATTGGAGGCAACCTGATTACAACTGCAGAATATAAGGATTTGACTGACATGATGCAAAGGGTTGGACTGTTTGAAACAAAAACTAGGGGCAATCACTACACTTGGTCAAATAAGCATAGCATTGGTTTGATTTACTCTAGAATTGACCATTTGATTGGCAATGCGGAATGGTTCCTACAGTTTAATGAAACCTTGGTGGAGGTCCTCCTTCCTCACATATCTGACCATGCTCCTTTAAGGATTAGGCTAGAGCAGCATATACCTCAGAGGAAATATCATTTCAAATTCCTTAACTGTATTACTAGGGACCCATCTTATGCGCAGGTGATTCAGGATGGATGGCAGTACTCTGTTAGAGGCACTGCAATGTACAGGTTGTGGAGTAAACTGAAATATTTGCAGCATACTCTTAAGCCTCTTACTAGAAAAACCACTGACATTCAAATGCAAATTCAGCAAGAAAGGCATGACCTCACACAAGCACAAGAGCAGCTGAACCAAAATTTGTTTGATGAAACTCTAAGAGGCCAGGTTAAGAGTTGTTATGAGAAGGTGCTTCATTTAAATCAGGTTGAGGAAGAGATGCTGATGCAGAAATCTAAAGTCACATGGCTGAAACTTGGAGACAGTAATAACTCATATTTTCATGCAGCAGTCAAGGAAAAGAACAAGCAGAAGGGAATCTATACTTTACATGCTTTGGATGGGAGGATTCTCACTGCTCAGGATCAAATTGAAGATGAAATTCTGGAGTTTTATAAGCAATTGAAAGGAAAAATTCTATCTAGAGACCAGGCTCAGAAGCTCATTGCCCCTATTGAGGACAAGGAAATTTGGGAGGCATTGATGAGTATTGGCAATAATAAGGCACCAGGAGTGGATGGCTTTAATGCTTACTTCTTCAAAACCTCTTGGAATACTATTGGGAAAGATGTGAAAGAGGCAATTCAGGAATTTTTCAATGAGAACAAGTTATACAGAGCTGCCAATTGTTCTTTGGTGACTCTTATCCCTAAATCTTCAGAGGCAAAGACTGTTAGGGATATGCGACCTATACAAGATCATTTCAAAAATCATCACCACAAGATTGGGCAGAGTGATCTCAGATGTTATAGATGA 3102 0.4046 MCIRIIGASNRRYGYIGDIVVAVIKKAVPNSSVERSQVIRAVIVRTCKELKRRNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARELRQFNFTKIVSLAPEIEILLNQKIKKREHVDYIESKEKKSIVGKDTIADILTLIRNADMNRKRTVKIPLTNTTENIEEQLKVKNGLMTKPRRGVGRPKKLAVALQRTAERTIVTQATIELAPASSETSLKIPEKTEEPSPKEDDPPSTETIPTNPKPWVEIIQGNRDVSRGMAVDFIAPNIVNGEIEIAIEEDDVAQEIEYWENAIILFALGEILSMHAVKKFMEKTWNFVGLPELYYNDAGYFIVRFRNYEDMEKVMAQGPYFIYGKPLFLKHWSENFEIKEDLLRILPLWITLPNLPLYLWGKRSISKITSAIGKPITTDECTAKKLRISYARVLVEVDITQKLRDSITIKDHTGKMIEQQIVYEWKPSYCHSCLKIGHDCATQKTGKQKKVWQPKPPVQEKKEEDVPMPIIPEKEPNPTEKTDWKLVTSKGDRGKRPINSTPTQLQIWEFQNPFTPLRTGENPAGEHSGGLPIIALLETRVKKHNAEGIRKQLGAKWQFVDNYAHHDNGRIWLMWMDNLVSVNVLQMGDQYIHAELEKRKILWNTIENLGTNLHTPWIVMGDFNNVINSQGRIGGNLITTAEYKDLTDMMQRVGLFETKTRGNHYTWSNKHSIGLIYSRIDHLIGNAEWFLQFNETLVEVLLPHISDHAPLRIRLEQHIPQRKYHFKFLNCITRDPSYAQVIQDGWQYSVRGTAMYRLWSKLKYLQHTLKPLTRKTTDIQMQIQQERHDLTQAQEQLNQNLFDETLRGQVKSCYEKVLHLNQVEEEMLMQKSKVTWLKLGDSNNSYFHAAVKEKNKQKGIYTLHALDGRILTAQDQIEDEILEFYKQLKGKILSRDQAQKLIAPIEDKEIWEALMSIGNNKAPGVDGFNAYFFKTSWNTIGKDVKEAIQEFFNENKLYRAANCSLVTLIPKSSEAKTVRDMRPIQDHFKNHHHKIGQSDLRCYR 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi162g00001 1033 Coils Coil 809 829 - -
Vivi162g00001 1033 SUPERFAMILY Ribosomal protein L14 1 102 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vivi162g00001 1033 SMART Ribosomal_L14_2 1 103 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vivi162g00001 1033 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 623 1017 - -
Vivi162g00001 1033 Gene3D - 128 198 - -
Vivi162g00001 1033 Gene3D Endonuclease/exonuclease/phosphatase 559 744 IPR036691 -
Vivi162g00001 1033 NCBIfam 50S ribosomal protein L14 1 102 IPR005745 GO:0003735|GO:0006412|GO:0015934
Vivi162g00001 1033 SUPERFAMILY Ribosomal protein S8 130 196 IPR035987 GO:0003735|GO:0005840|GO:0006412
Vivi162g00001 1033 SUPERFAMILY DNase I-like 624 744 IPR036691 -
Vivi162g00001 1033 FunFam Ribosomal protein L14 37 103 - -
Vivi162g00001 1033 MobiDBLite consensus disorder prediction 210 242 - -
Vivi162g00001 1033 Pfam Domain of unknown function (DUF4283) 281 424 IPR025558 -
Vivi162g00001 1033 Pfam Ribosomal protein S8 131 178 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vivi162g00001 1033 MobiDBLite consensus disorder prediction 216 230 - -
Vivi162g00001 1033 Gene3D Ribosomal protein L14 1 102 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vivi162g00001 1033 ProSitePatterns Ribosomal protein L14 signature. 41 67 IPR019972 -
Vivi162g00001 1033 Hamap 50S ribosomal protein L14 [rplN]. 4 103 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vivi162g00001 1033 Pfam Ribosomal protein L14p/L23e 1 102 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi162g00001 16 86 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 38.028 2.96e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi162g00001 - - vvo:131625594 2039.23