Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1625g00001 ATGATTCTACCATTCACAATATTTCATATGATCATTGTTTTAATAATATCTCCTCCACTAGCATCAGCACAAGATCAAATAATAGTAGCACGAGATGGTTGTAATTCAACATGTGGATATGTTTATATTCCTTTTCCATTCGGAATGAATAGACCTCATTGCTACGCACACAAATGGTTTGAAATAGAATGCAAATCAGACAAAAATTCTTCTCATATCCCTAAACCTTACTTGAAGTCGTTAAATCTTGAGGTAACAAATTTTCACCCGTACTCGAGCATGGTTGAGATTAAGAATCCGGTTTACCGTTCGAATTGTCATAAAAACAAAATTAGTAGCCACAGTAGTAAAACCGTTACTCTTACAGACAGTCCTTTCATATATTCACAGGCTGAGAATACGTTTCTAGCTGTGGGATGTAACAGTCTTGCTTTTCTTCAGTCAAATGGGACAACCGTTGGTGGTTGTGTATCAATTTGTGACGACAACAACAGTAGCAATTTCAATTTCAATATAGGTCGCGACGGTTGTAATGGAAGGTATTGTTGTAAGACCTCATTGCCTTCACATCTTTCAGAGTTTAACGCAACAATAAGAGGTTTAAGCGAACACAATAGTGATGGGTGTGGTTATGCTTTGATTGCAAGTAGTTATTCGTTAAGATTAGATAGTCCAATTATGAGTAATTATGAGACTGAAGAGAAATTGAAAGAGTTGAAGAATAAGGAATATGTTCCTGCACTTCTTGAGTGGGAGATTTTGAATGATATGTTAATTAATTCCACATTTCAACTACCTCCAGATTGTTATGACTCCAACGTTACTTCTTTAAGTAACAGAAACACTGGTAAGCAATGTCGATGCTCGTCCTGGCAGCAAGACGATGACTTTGACTCTCCCTACCTTGATGGAGAATACTATGGCAATCCATACATTGCTGGAGGCTGTAAAGATACAGATACAGTTCCAAAGTACTACTTTCATAAGAATAATCGATGGAAGAAGTGGGTTATTGTAGGAATTTCATCAAGTCTCGGATCCATCGGTTTCCTCATCGGTCTACTGTTTTTGTACAAAGTTTTGAAACGAAGAATGATAAAGAAACGCAAGGAAAAATTCTTCAAAAGAAATGGTGGTTTGTTGTTGCAAAAAAGAATGTCTTCGGGAGAAGTCAATGTTGACAGAACTACTCTCTTCACTTTAAAGAATTTAAAGAAAGCCACTGACAATTTCAATAAGGATAGAGTTCTTGGAAAGGGAGGGCAAGGCACCGTTTACAAAGGCATGTTGGTGGATGGTAAAATTGTTGCAGTGAAAAGGTTTAAGGTTGAAGGAAATGTTGAAGAGTTCATTAATGAGTTTATTATTCTTTCACAAATCAACAATAGAAATGTTGTTAAATTATTGGGGTGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAGTATTTGCATGATCAAAATGAGGACATACCAATGACGTGGGACATTCGTTTGAGAATTGCTTGTGAAGTTGGTGGTGCTTTATTTTATTTGCACTCAGTTGCATCTCAACCAATTTATCATAGAGATGTCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAATTAGCAGACTTTGGAGCATCAAGAATAATTTCAATTGAAGCTACTCACCTTACCACAATGGTTCAAGGTACTTTTGGATACTTAGACCCTGAATATTTTTACACTAGTCAATTTACAGAGAAAAGTGATGTTTACAGCTTTGGAGTAGTCCTTGCTGAACTTTTAACTGGTAAGAAACCAATATCTTCTACAAAAATATCTGGGGAATCACAAAATTTAGCTTCCTATTTTGTTCAGTGTATAGAGGAGAATATGTTGTTTGACATAATGGACAAAAGGGTCACAAAAGGAGGGGAGAAAGAACATATCACTGCAGTTGCAAATCTTGCATTTAGATGCTTAGAAATAAATGGAAGAAAACGACCAACTATGAAAGAAGTCACATTAGAATTGGAAGGGATCAGGGGATTCAATAAGAATCTTAATGCACAGCAAAATGACGAGGAAATTGAGTTTTCTGGAATTGAACAATGCCAACCTTGGGATGGATTTTCTGCATCAAATTCATTACCAATTATGAGTAGCCAAACACACTCGGAGGTTATGCACATTCTGGCGATATAA 2211 0.3605 MILPFTIFHMIIVLIISPPLASAQDQIIVARDGCNSTCGYVYIPFPFGMNRPHCYAHKWFEIECKSDKNSSHIPKPYLKSLNLEVTNFHPYSSMVEIKNPVYRSNCHKNKISSHSSKTVTLTDSPFIYSQAENTFLAVGCNSLAFLQSNGTTVGGCVSICDDNNSSNFNFNIGRDGCNGRYCCKTSLPSHLSEFNATIRGLSEHNSDGCGYALIASSYSLRLDSPIMSNYETEEKLKELKNKEYVPALLEWEILNDMLINSTFQLPPDCYDSNVTSLSNRNTGKQCRCSSWQQDDDFDSPYLDGEYYGNPYIAGGCKDTDTVPKYYFHKNNRWKKWVIVGISSSLGSIGFLIGLLFLYKVLKRRMIKKRKEKFFKRNGGLLLQKRMSSGEVNVDRTTLFTLKNLKKATDNFNKDRVLGKGGQGTVYKGMLVDGKIVAVKRFKVEGNVEEFINEFIILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDIRLRIACEVGGALFYLHSVASQPIYHRDVKSTNILLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFYTSQFTEKSDVYSFGVVLAELLTGKKPISSTKISGESQNLASYFVQCIEENMLFDIMDKRVTKGGEKEHITAVANLAFRCLEINGRKRPTMKEVTLELEGIRGFNKNLNAQQNDEEIEFSGIEQCQPWDGFSASNSLPIMSSQTHSEVMHILAI 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1625g00001 736 SUPERFAMILY Protein kinase-like (PK-like) 396 678 IPR011009 -
Vivi1625g00001 736 SMART serkin_6 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1625g00001 736 Pfam Wall-associated receptor kinase galacturonan-binding 34 92 IPR025287 GO:0030247
Vivi1625g00001 736 FunFam Wall-associated receptor kinase 2 485 702 - -
Vivi1625g00001 736 Pfam Protein kinase domain 411 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1625g00001 736 CDD STKc_IRAK 417 683 - -
Vivi1625g00001 736 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 691 IPR045274 GO:0007166
Vivi1625g00001 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Vivi1625g00001 736 FunFam Wall-associated receptor kinase 2 381 484 - -
Vivi1625g00001 736 Gene3D Transferase(Phosphotransferase) domain 1 485 707 - -
Vivi1625g00001 736 Gene3D Phosphorylase Kinase; domain 1 382 484 - -
Vivi1625g00001 736 ProSiteProfiles Protein kinase domain profile. 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1625g00001 2 700 Receptor kinase-like Gene Family AT1G16120 42.255 6.54e-177 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi1625g00001 Pkinase 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1625g00001 - - vvo:131640934 1055.43