Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi161g00011 ATGTCTCGTTATCGTTCTTTGAATCCCTTCGCAATAACTCACTCCGATTCTGGTTCCGATTCTGACGTTGACTCACTGAGTCATTTCGTCACCGACCTCTTCGAAAATCGTTCCCCCGCCGATCCGGTTTGTCCCTGGGATGACGACGGTGATGAAGATGATGATGAAAGTGACGTGAACCCTTTCTCGGGGTTTGCTTGCGATCAAGTGGGTGGTGGTAATTCCACTGGGATTAGGGTTGTTGGGTTTGGTTCCGATTCGGAATCGAGTGGGCATGATGAAGAATTTGGTTTTGAGGGAAGAAATGATTGGGATGATGATGAGAGGGTTGGTGGATTGTGTTGGGATAGTCTTTGTTTGGAGGATCATAGGAGTATTTTGAATGATTGGGAGGAAGTGGGTGAGGAGAGGGTGAATGAGATTGAAGATTCTTCTAGTTTGTTGATTGGTGAGGTTGAGGTTGAGGTTGATGAAGTTGATGATGTTGATGATCAATCGGTAGCGTCTGGGTTCGAGGAGGATGAAGAGGAACAAGGGGAAGAGGCTTTGCGGTATTTGGAATGGGAGATTCTATTGGCTTTTAACAATTTCGAGAGGAGTGGTGGATTGGAACATGATGACGAGAATATTAATAATTTGTATTTAGCTGTTCAGGAAGGTTTTATTTCGGGGAATGCTGATTATGATATTCTTTTCAGTCAGTTATTGGAGAACGAGAGTGGTTTGAAGGGTAGTCCACCGGCGGCGAAGAGTTTTGTGGAGAATCTCCCTTTGGTGGAATTGACTGAGGAGGAGTTGAAAAAGAAGGATGTTATGTGTGCCATTTGTAAAGATGAGGTAATGGCGGAAGAGAAGGTGAGGAAGCTGCCTTGCTCACATTGTTACCATGGAGATTGTATTTTGCCGTGGTTGAATATTCGCAACACGTGTCCTGTTTGTCGGTTCGAGTTGCCAACTGATGATGCTGATTATGAGCAGAGTAAGGTTCATAGAATTGCCCGTGATCTGTTGGATTTTGCAGCATAG 1026 0.4474 MSRYRSLNPFAITHSDSGSDSDVDSLSHFVTDLFENRSPADPVCPWDDDGDEDDDESDVNPFSGFACDQVGGGNSTGIRVVGFGSDSESSGHDEEFGFEGRNDWDDDERVGGLCWDSLCLEDHRSILNDWEEVGEERVNEIEDSSSLLIGEVEVEVDEVDDVDDQSVASGFEEDEEEQGEEALRYLEWEILLAFNNFERSGGLEHDDENINNLYLAVQEGFISGNADYDILFSQLLENESGLKGSPPAAKSFVENLPLVELTEEELKKKDVMCAICKDEVMAEEKVRKLPCSHCYHGDCILPWLNIRNTCPVCRFELPTDDADYEQSKVHRIARDLLDFAA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi161g00011 341 MobiDBLite consensus disorder prediction 36 60 - -
Vivi161g00011 341 FunFam E3 ubiquitin-protein ligase RING1-like 234 320 - -
Vivi161g00011 341 MobiDBLite consensus disorder prediction 45 59 - -
Vivi161g00011 341 SMART ring_2 273 313 IPR001841 -
Vivi161g00011 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 173 318 - -
Vivi161g00011 341 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Vivi161g00011 341 Pfam Ring finger domain 272 314 IPR001841 -
Vivi161g00011 341 MobiDBLite consensus disorder prediction 1 23 - -
Vivi161g00011 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 320 IPR013083 -
Vivi161g00011 341 SUPERFAMILY RING/U-box 260 320 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi161g00011 188 337 C3H Transcription Factor Family AT3G02340 48.485 2.26e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi161g00011 - - vvo:131625572 634.024