Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1619g00001 ATGGCTACCCAAGAAACTTTGCTAGATAAGCCTAGAAAATCACTTCCCAAAACTTTCTGGTTAATCCTCTCTTTAGCTGCTATCATAAGCTCATCAGCCCTTATTGCTACTCATTTCAAGAAACCATCCTCCTTCTTTCACCTTTCATCAGCTTCCAGTCTGTGTGAGCATGCTCTAGATACAAAATCATGCTTAACTCATGTATCAGAAGTAGTTCATGGCCCATCCTTGGCCAACTCAAAAGACCACAAATTGAGTACACTCTTGTCCTTATTAACTAAATCAACCACACACATTCAAAAAGCAAGGGACACGGCCAACGCGATTAAGTGCAGAGTTAACAGTCCTAGAGAGGAGACCGCTTTGAATGACTGTGAGCAACTAATGGAGTTGTCCATAGACAGAGTTTGGGACTCAATGTTGACACTGACAAAAAATAACATTGACTCACAGCAAGATGCGCACACATGGCTAAGTAGTGTGCTCACTAACCATGCAACATGTTTGGATGGTTTAGAAGGTACATCTCGGGTTGTTATGGAAAGTGACATCCAAGAGTTGAAATCTAGAGCTAAAACTTCTCTAGCAGTGTTTCTTGCTGTTTTTCCTCAAAAGGGTGATGACCAATTTGTTGATGAAACATTGAATGGGGAATTTCCATCATGGGTTACAAGCAAGAATAGGAGGCTTTTGGAGTCGTCAGTTGGAGACATAAAGGCGAATGTTGTGGTGGCCACTGATGGGAGTGGAAAGTTCAAGACTGTGGCAGAGGCTGTGGCATCTGCACCGGACAACGGTAAGACGACATATGTTATTTATGTGAAAAAGGGAACATACAAAGAGAATATAGAAATTGGAGCCAAAAAAACAAATGTGATGCTAGTTGGTGATGGTATGGATGCAACAATAATCACAGGCAACTTGAATTTCATCGATGGAACAACCACCTTCAAAAGTGCTACTGTTGCTGCAGTTGGTGATTCATTTATAGCACAAGACATTTGGTTCCAAAACTCGGCAGGCCCAGAGAAGCACCAAGCAGTGGCTCTCCGTGTTGGGGCCGACAGATCTGTCATCAACCGATGCCGTATTGACGCCTTTCAAGACACTCTCTACGCACACTCCAACAGGCAATTCTATCGTGACTCAGTCATCACAGGTACCGTCGACTTCATCTTTGGAAACGCGGCTGTAGTGTTCCAGAAGTGCAAGTTAGTGGCCCGAAAGCCCATGAGCAACCAAAACAACATGTTCACAGCCCAAGGTCGAGAAGACCCCGGTCAGAACACAGGTACTTCAATTCAACAATGTGACCTAACACCAAGCTCAGACCTTAAGCCGGTTACGGGATCAATCAAAACTTTCCTAGGCCGCCCATGGAAGAAATTCTCTAGAACTGTTGTGCTGCAATCCTTTCTTGACAGCCACATTGACCCGACGGGATGGGCGGAATGGGACGCTGCGAGTAAGGACTTTTTGCAAACGTTGTACTATGGAGAGTACATGAACAATGGACCAGGTGCAGGTACCAGCAAGAGAGTGAATTGGCCCGGTTATCATGTCATCACAAGTGCAACGGAAGCTAGCAAGTTTACAGTAGCACAACTAATTCAAGATAATGTTTGGTTGAAGAACTCAGGGGTGGCCTTTACCGAGGGCTTGTAG 1665 0.4468 MATQETLLDKPRKSLPKTFWLILSLAAIISSSALIATHFKKPSSFFHLSSASSLCEHALDTKSCLTHVSEVVHGPSLANSKDHKLSTLLSLLTKSTTHIQKARDTANAIKCRVNSPREETALNDCEQLMELSIDRVWDSMLTLTKNNIDSQQDAHTWLSSVLTNHATCLDGLEGTSRVVMESDIQELKSRAKTSLAVFLAVFPQKGDDQFVDETLNGEFPSWVTSKNRRLLESSVGDIKANVVVATDGSGKFKTVAEAVASAPDNGKTTYVIYVKKGTYKENIEIGAKKTNVMLVGDGMDATIITGNLNFIDGTTTFKSATVAAVGDSFIAQDIWFQNSAGPEKHQAVALRVGADRSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTVDFIFGNAAVVFQKCKLVARKPMSNQNNMFTAQGREDPGQNTGTSIQQCDLTPSSDLKPVTGSIKTFLGRPWKKFSRTVVLQSFLDSHIDPTGWAEWDAASKDFLQTLYYGEYMNNGPGAGTSKRVNWPGYHVITSATEASKFTVAQLIQDNVWLKNSGVAFTEGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1619g00001 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 202 IPR035513 -
Vivi1619g00001 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 192 IPR035513 -
Vivi1619g00001 554 Pfam Plant invertase/pectin methylesterase inhibitor 52 194 IPR006501 GO:0004857
Vivi1619g00001 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Vivi1619g00001 554 Gene3D - 235 554 IPR012334 -
Vivi1619g00001 554 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vivi1619g00001 554 Pfam Pectinesterase 241 539 IPR000070 GO:0030599|GO:0042545
Vivi1619g00001 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Vivi1619g00001 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Vivi1619g00001 554 CDD PMEI-like_4 39 201 - -
Vivi1619g00001 554 FunFam Pectinesterase 235 554 - -
Vivi1619g00001 554 PANTHER PECTINESTERASE 28 544 - -
Vivi1619g00001 554 NCBIfam pectinesterase inhibitor domain 23 195 IPR006501 GO:0004857
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1619g00001 3 554 Carbohydrate Esterase AT1G11580 54.174 0.0 597