Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1617g00004 ATGGATTGGAATATTAATGAGAGCACAAGACCCTTTGTTCCTCATCAAGACTCTTCCTTAAGCTTCTTCTACAACAACAACAACCCTTATTCAGGAATGGAAGTGGGTCAAGGTGCATTAGGTGAAACACATCAGAGGTTGCTTCCAGCAATGGATGAAATGAACATTAATGGAAATAACTATAGAGAGAAGAAGAAGAGATTGACAAGTAACCAGATTGATTTGCTGGAGAGGTGTTTTCAAGAGGAAATAAAGTTAGAGCCTGAAAGGAAAATGAAGCTTTCAAGAGAGTTAGGGCTTCAACCTCGTCAAATTGCTGTTTGGTTTCAAAACAGGCGTACTAGGTGGAAGACTAAGCAGCTTGAACATTCCTATGATGTTCTTAAACAAGAGTTTGATGCTGTCTTCAAAGAAAAACAGAAACTTCAAGAAGAGGTTATGAAGTTGAAAGGAAAGCTAAAAGAACAAGCCAACTTCAGGACACAATCATCCTACATTGAAGAAACAGTAGAAAGCACATCAGAAGGTCTACGATGTTCCAACAAGCCACTAGGAACACCAGATCAAGGCTTCAACAACACCAACAACAATAACAGCAGTACTTGTTTCACAGTTGAAGATTTTAACTCAGTTTCAATGCCTCCTCATCAATGTCACTGGCCAGTGTTACCTTATTATCCCTAA 684 0.3904 MDWNINESTRPFVPHQDSSLSFFYNNNNPYSGMEVGQGALGETHQRLLPAMDEMNINGNNYREKKKRLTSNQIDLLERCFQEEIKLEPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHSYDVLKQEFDAVFKEKQKLQEEVMKLKGKLKEQANFRTQSSYIEETVESTSEGLRCSNKPLGTPDQGFNNTNNNNSSTCFTVEDFNSVSMPPHQCHWPVLPYYP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1617g00004 227 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Vivi1617g00004 227 SUPERFAMILY Homeodomain-like 51 121 IPR009057 -
Vivi1617g00004 227 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Vivi1617g00004 227 Gene3D - 57 129 - -
Vivi1617g00004 227 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 192 IPR045224 GO:0003700
Vivi1617g00004 227 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Vivi1617g00004 227 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Vivi1617g00004 227 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Vivi1617g00004 227 CDD homeodomain 62 120 IPR001356 GO:0003677
Vivi1617g00004 227 Coils Coil 51 71 - -
Vivi1617g00004 227 Coils Coil 125 159 - -
Vivi1617g00004 227 Pfam Homeobox associated leucine zipper 119 153 IPR003106 GO:0006355|GO:0043565
Vivi1617g00004 227 SMART HOX_1 62 123 IPR001356 GO:0003677
Vivi1617g00004 227 FunFam Putative homeobox-leucine zipper protein ATHB-51 61 124 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1617g00004 11 149 Homeobox Transcription Factor Family AT5G03790 53.472 5.86e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1617g00004 Homeodomain 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1617g00004 - - vvo:131613115 253.832