Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1612g00001 ATGTCAAGGCCTGTTGAGAGAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACCGATGGAAAGTTGTCTCCAACAGCAAGGAACATTTTGAAATGATCTTTGTTGACAAATTGGTGATTACCCTGTTTATGTTTCAGGAGATGATATTCATTGCTGTTGTTCCAGCACCGCATGTGTCGGTTTTCACCGAAAAATGCTTATTAGGCCATACTTATACTGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCCTTCAGGGCATCGGGACACAGATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCCCGAAATCGATTTTATTTACAAGTTTTTCAGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCGTTGGAATGGTGGATAGTATTGGTTATGCGCAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGATCACAGCAACAACATGTTGAACTGTACTCTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGCTGCATCACTACCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGACCCTTTTATGTGTTGATGCTGATTTTCCGATCATGAAAGACTTTATTGATAGAATGCCTGAGGAGAGCAAGGTAACCCTGTCTGACCAACTTGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAAAAGCTCACTCCTGTGCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGCGCTACTGTCGCTACAACAAAATTATTAGTAGCATCTCCGTTTGGATGGTTCTATCGTGCCTGCCATATGTGTCAATCTATAGCGCGCGGGGACAGCCCCCCCTTTGAGTGTGAATCTGGTCATGAAACCATGGCTGAAGTCCTTAGGTATAAGATTGAAATTGAGGTTACTCACGGGGGCCAAAGCTGCAATTTTGTCTTCTGGAACAGAGAATGTGAAATGCTGTTGGGTTTATCTGCATCGCAACTTCGTAACACTATGATTCAGTTGTTTAAATAG 1188 0.4133 MSRPVERIAEINDGKELWKIVVRIHHRWKVVSNSKEHFEMIFVDKLVITLFMFQEMIFIAVVPAPHVSVFTEKCLLGHTYTVSNFKVVPYVLAFRASGHRYMIKFTAGTSVLDEDKHEIPPKSILFTSFSDIITGRFDKHVLIHVVGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVRVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVTLLCVDADFPIMKDFIDRMPEESKVTLSDQLGGNSQYSSQSSENQKLTPVQKLFSKAVVLPIAEIIQLTDVTFCATVATTKLLVASPFGWFYRACHMCQSIARGDSPPFECESGHETMAEVLRYKIEIEVTHGGQSCNFVFWNRECEMLLGLSASQLRNTMIQLFK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1612g00001 395 SUPERFAMILY Nucleic acid-binding proteins 7 111 IPR012340 -
Vivi1612g00001 395 CDD RPA1_DBD_A_like 19 111 - -
Vivi1612g00001 395 Gene3D - 3 112 IPR012340 -
Vivi1612g00001 395 SUPERFAMILY Nucleic acid-binding proteins 126 251 IPR012340 -
Vivi1612g00001 395 SUPERFAMILY Nucleic acid-binding proteins 302 388 IPR012340 -
Vivi1612g00001 395 Gene3D - 262 392 IPR012340 -
Vivi1612g00001 395 CDD RPA1_DBD_B_like 145 249 - -
Vivi1612g00001 395 Gene3D - 118 257 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1612g00001 5 386 Core DNA Replication Machinery Family AT5G45400 19.370 7.75e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1612g00001 - - vvo:131642368 785.793