Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00003 ATGTTAGATCTTAATCTATATGATGCGAACTCGGCCGATTCCCCTCAGAACGCCGACTCGCCGATGATTTCGGAGAAGTTTCATCAAACTTCATGGAATCAAATGATGGAATCAGGAACATCGAATTCCTCCATCGTCAATGCGGAAGCGGACGCGGACGGTTCAAGCAACAACGCAGGTGAGGAGGACTCGTGCTCCACGCGCGTGAATGACGTGTTCACCATCAGTTTCGATATTCTTAAAATGGAAGGTTCAAACGACGTCGTAACGAAAGAGTTTTTCCCTGTGACTGGAGGAGGTGAAGGTTTGTCTAATAATTGGAAGTTGCAAACTACGTCGTCGTTTCCGATTAGGAATGGTTCGATTGATCTATCGTTTGATCAGAAAGAAGAGATGAAGTTTGTTCAACCTCCACAACAAGCTAAAAAGAGTAGGAGGGGACCAAGGTCTCGAAGCTCGCAATACAGAGGAGTCACGTTTTACAGAAGGACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCACGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGAGGAGTTGGTGCTGACATAAATTTCAATCTGAATGATTATGATGATGATCTTAAACAGACGAAGAATTTATCGAAAGAGGAGTTTGTGCATATACTTCGTCGTCAAAGTACTGGTTTCTCAAGAGGAAGTTCAAAATACAGAGGAGTAACACTTCACAAGTGTGGCCGTTGGGAAGCTCGAATGGGACAATACCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTATCCAAAGCAATGGAATGGAAGCAGTGACTAATTTTGAGCCCAGCACATACGAAGGAGAGATGAAATCTGCAGCCATAAATGATGGCAGCAGTCCAAATCTTGATCTCAATTTGGGCATAGCCAAACCAGCACCGGGTCCCAAAGAAAATTGGGGGAAACTTCACTTCCCCTCTGTCTCTTACACAAGTTCAAGGATGGAAACGAATGTTTCAGGAATCAGTAATTCATCTTTAAAAAGGCTATTAGTAACTGAAGAGCATCGTTCTTTTCGGAATGACATGTATCCCGGTTTCTTTCCCAATGAGGAAAGAGCAGATGGTATCAACAAAGATCCTTTAAAAGGACTCCCCATTTGGGCGTGGCAAACTAATGGCCAGGTCACTACTACCCCAGTGGCACGGGTCTCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTCCCTTTCCATCTACTCCATTATTTCCACCAAGATCTATGAACTCAATTCCCCTGAGTCTCTATTTTACATCGCCCAATGCACCTAACAGCAACACATCTCAATAA 1416 0.4393 MLDLNLYDANSADSPQNADSPMISEKFHQTSWNQMMESGTSNSSIVNAEADADGSSNNAGEEDSCSTRVNDVFTISFDILKMEGSNDVVTKEFFPVTGGGEGLSNNWKLQTTSSFPIRNGSIDLSFDQKEEMKFVQPPQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYDDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQYLGKKYIYLGLFDSEVEAARAYDKAAIQSNGMEAVTNFEPSTYEGEMKSAAINDGSSPNLDLNLGIAKPAPGPKENWGKLHFPSVSYTSSRMETNVSGISNSSLKRLLVTEEHRSFRNDMYPGFFPNEERADGINKDPLKGLPIWAWQTNGQVTTTPVARVSAAASSGFSISAPFPSTPLFPPRSMNSIPLSLYFTSPNAPNSNTSQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00003 471 CDD AP2 154 209 IPR001471 GO:0003700|GO:0006355
Vivi15g00003 471 FunFam AP2-like ethylene-responsive transcription factor 153 212 - -
Vivi15g00003 471 SUPERFAMILY DNA-binding domain 245 304 IPR016177 GO:0003677
Vivi15g00003 471 MobiDBLite consensus disorder prediction 1 22 - -
Vivi15g00003 471 ProSiteProfiles AP2/ERF domain profile. 154 210 IPR001471 GO:0003700|GO:0006355
Vivi15g00003 471 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Vivi15g00003 471 SMART rav1_2 246 309 IPR001471 GO:0003700|GO:0006355
Vivi15g00003 471 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Vivi15g00003 471 PRINTS Ethylene responsive element binding protein signature 247 258 IPR001471 GO:0003700|GO:0006355
Vivi15g00003 471 MobiDBLite consensus disorder prediction 133 155 - -
Vivi15g00003 471 Gene3D AP2/ERF domain 245 304 IPR036955 GO:0003700|GO:0006355
Vivi15g00003 471 Gene3D AP2/ERF domain 153 212 IPR036955 GO:0003700|GO:0006355
Vivi15g00003 471 ProSiteProfiles AP2/ERF domain profile. 246 303 IPR001471 GO:0003700|GO:0006355
Vivi15g00003 471 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 71 334 - -
Vivi15g00003 471 Pfam AP2 domain 245 292 IPR001471 GO:0003700|GO:0006355
Vivi15g00003 471 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Vivi15g00003 471 CDD AP2 245 305 IPR001471 GO:0003700|GO:0006355
Vivi15g00003 471 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi15g00003 78 329 AP2-EREBP Transcription Factor Family AT4G36920 64.576 1.06e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi15g00003 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00003 K09284 - gmx:100788303 610.142