Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi159g00042 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATTAAGAACAGGACTAACCGAGGCAGAGGCAGAGGACGTGGCAAAGCCCTTTCAGGCCGTGGAAGTGGGGCTCTAGGAGGTGGAAGAAGGACCGGTGCTGTTAATGGTAGAAGAATGACTGGTCCTGGTAATGGTGGAAGAGCAACTGGTGCTGTTCGTAGAGGCCCACTCATGGTCAACACTCGCCCATCATCTTATGCTATTGCCAAGTCTATTCGCAGAACCAAGCCTTTTCCATGGCAGAGTGATTTGTTAGAGGATAGTCTTAGAGCTGCTGGAATTCAAGGAGTAGAAGCTGAGACAAAGTTGTATGTTTCAAACTTGGACAGAGGAGTAACCAATGAAGACATAAGGGAGCTTTTCTCTGAGCTTGGAGACTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGGCACCCAACTGGATCAGCTGAAGTGGTTTATAATAGAAGAAGTGATGCATTTGCTGCTCTTAAAAGATATAACAATGTACTTTTGGATGGAAAGCCCATGAAAATCGAGATTGTGGGAACAAAATCAGAATTGCCTGTCACTGCACGGGTGAATGTAACTGGGATGAATGGACAGAGGAAGAGGACAGTTGTAATGACGCCTAGAGGTGGTCGAGGTGGAGGTTCTGCTGTGTCAAATCGCGGTGCTGGTTGGGGACGTCGAGGTGGCTCAAGGGGTGGCAGTGGTAGTGGACGTGGTCGGGGTCGTGGCCGTCCTGGCAGGGGTGGAGGTCGTGGTCGGGGAAGAAAGGATGGAGTTGAAAAGTCAGCTGAGCAACTTGACAAGGAACTGGAGACCTATCATGCAGAGGCTATGAACATCTCATAA 876 0.484 MASSLDMSLDDRIKNRTNRGRGRGRGKALSGRGSGALGGGRRTGAVNGRRMTGPGNGGRATGAVRRGPLMVNTRPSSYAIAKSIRRTKPFPWQSDLLEDSLRAAGIQGVEAETKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTKSELPVTARVNVTGMNGQRKRTVVMTPRGGRGGGSAVSNRGAGWGRRGGSRGGSGSGRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMNIS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi159g00042 291 Gene3D - 106 190 IPR012677 -
Vivi159g00042 291 Pfam C-terminal duplication domain of Friend of PRMT1 229 285 IPR025715 -
Vivi159g00042 291 Coils Coil 266 291 - -
Vivi159g00042 291 MobiDBLite consensus disorder prediction 1 64 - -
Vivi159g00042 291 MobiDBLite consensus disorder prediction 215 291 - -
Vivi159g00042 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Vivi159g00042 291 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 288 - -
Vivi159g00042 291 SUPERFAMILY RNA-binding domain, RBD 16 187 IPR035979 GO:0003676
Vivi159g00042 291 CDD RRM_THOC4 113 187 - -
Vivi159g00042 291 SMART FoP_duplication_2 218 291 IPR025715 -
Vivi159g00042 291 SMART rrm1_1 114 186 IPR000504 GO:0003723
Vivi159g00042 291 MobiDBLite consensus disorder prediction 260 284 - -
Vivi159g00042 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi159g00042 115 193 Eukaryotic Initiation Factors Gene Family AT2G23350 37.975 4.02e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi159g00042 K12881 - gmx:100801491 375.941