Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi159g00017 ATGACTAGAAAGAAGGTGAAACTAGCATACATACTCAACGACTCCGCGAGGAAGGCGACATTCAAGAAAAGGAAGAAAGGTCTAATGAAAAAGGTTAGTGAACTTAGCACCCTTTGTGGGATTGATGCCTGCGCTATAATTTACAGTCCCTACGATCCTCAACCCGAGGTTTGGCCATCACCAATAGGTGTCCAAAGGGTGCTTTCGAAGTTCCGAAGAATGCCTGAATTGGAACAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTTTGAAGCAGAGGATTCAAAAGGCGAAAGATCAATTGACTAAACAAAGAAAAGATAATAGAGAAAAAGAAATGACTCAATTAATGTTTCAATATCTTAGTGATGATAAAACTATGCAAAATATAAGTATGCTTGATTTGAATGATATGGCATGGTTGATTGATCAGTATTTGAAAGATATTAATAGAAGGGTTGAAATGTTGAGTAAGAATGGTCAAGGTCAATCTCAAATGGTAGCACCAACAATGGTGACTAATGGTGTGGCTAAGATTGAAGATATTGGACAAGGGAGTCAGGGTGGTCATGTTTTGGATATGAATATGGATGTTGTGCAAAAGCAACATTGGTTTATGAATATGATGAATAATAGTGGTGGGGATGAGGCACCACCTCCTTTGGGAGATGTTAATCAACAAAATGGATTTTGGCCAAATCCATTTTTTCCTTGA 714 0.381 MTRKKVKLAYILNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSPIGVQRVLSKFRRMPELEQSKKMVNQESFLKQRIQKAKDQLTKQRKDNREKEMTQLMFQYLSDDKTMQNISMLDLNDMAWLIDQYLKDINRRVEMLSKNGQGQSQMVAPTMVTNGVAKIEDIGQGSQGGHVLDMNMDVVQKQHWFMNMMNNSGGDEAPPPLGDVNQQNGFWPNPFFP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi159g00017 237 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi159g00017 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi159g00017 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vivi159g00017 237 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi159g00017 237 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi159g00017 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi159g00017 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi159g00017 237 PANTHER MADS BOX PROTEIN 3 123 - -
Vivi159g00017 237 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi159g00017 237 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Vivi159g00017 237 Coils Coil 87 114 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi159g00017 1 211 Type I MADS-box Gene Family AT5G48670 50.980 1.06e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi159g00017 SRF-TF 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi159g00017 - - gmx:100813231 386.726