Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi159g00016 ATGGTTTTGTCATGGACAAGAAGAACCGTTTTCCGCCGTGCTCACAAGGCGAATAAACAACTCCCCGGCGTTGATTTAACGGTGGAGGAGATAACAATCCCGTCTCACTTCCGGTGTCCGGTGAGCCTCGACTTGATGAAAGATCCGGTGACTCTATCAACTGGAATCACCTACGACAGAGGAAGCATCGAGAAATGGATTGAATCTGGAAACAAAACATGTCCGGTTACTAATCAGAAGCTTACGACGTTTGAGATCACACCGAATCATACAATAAGAAAAATGATTCAGAGTTGGTGCGTTGAGAATAGTTCTTATGGGATTGAGAGAATTCCGACTCCTCGTATACCGGTTTCCAGCTACGAGGTTAACGAGGTTTGTACGAGGTTGCTGTCTGGTTCTAAGAGTTTGGATGAGAAAAAGTGTGTGGAGTTTGTCGGGAAGATTAAGGTTTGGTGGAGAGAGAGTGAGAGGAATAAGAGGGTTATAATTGGAAATGGAGTTTGTTCCGTTCTTGCAACGGTTTTTGATTCTTTTTCAAGTGTTTCTTTTGAGAATCATGTTGTTGTTTTGGAGGAGATTTTGGAGATTTTAACATGGATGGTTGTTATAACAAAATCCAAGCTTTGTTTATCTTTATCTTCTTTAGATTGTTTGGTTTGGTTTCTAGATGGGAAAGATTTAGGAGCAAGACAAAATGCTGTTTTGTTGCTTAAGGAAATGAATGTTGAGGAGTTATCAAAAGTGGAAGGTGTTGTTGAAGGTTTGGTTAAGATTATCAAGGAACCAATTGGGTCTAGTGCTACAAAAGCATGTTTGACAACAATTTTCAAGATGGTTTCATTTTCATCGGCTAAAAATAGAGTTGAAGTTGGTGAGAAGTTTGTTGAATTGGGTTTGGTTTCATTTTTGCTTGAATCAATAGTTGATGGAGAGAAAGGGGTGTGTGAGAAAGCACTTGGTGTGTTGGATTGTTTATGTGATTGCAAAAAGGGGAAAGAGGTTGTGAAAATGAATGCTTTGACTTTGCCTCTTGTGATTAAGAAAATCTTGAGGGTTTCTCCTTTGGCTTCTAGTTTTGCTGTTGGTGTTGTTAGGAAGATGTGTGAGAAGAAGGAAGAAGGTGTTTTGATTGAGGTGATTCAACTTGGTGGTTTTCAGAAATTGTTGGTTATGTTGCAAGTTGGGTGTGAGGAGAAGACTAAGGAGAATGTTACTGAGTTGTTGAAGATGTTGAATGGTTATAGAAGCAAAGCAGAATGTGTTGAGTCTTCATTAGAGTTCAAGTATCTTAAGAATTAA 1302 0.3925 MVLSWTRRTVFRRAHKANKQLPGVDLTVEEITIPSHFRCPVSLDLMKDPVTLSTGITYDRGSIEKWIESGNKTCPVTNQKLTTFEITPNHTIRKMIQSWCVENSSYGIERIPTPRIPVSSYEVNEVCTRLLSGSKSLDEKKCVEFVGKIKVWWRESERNKRVIIGNGVCSVLATVFDSFSSVSFENHVVVLEEILEILTWMVVITKSKLCLSLSSLDCLVWFLDGKDLGARQNAVLLLKEMNVEELSKVEGVVEGLVKIIKEPIGSSATKACLTTIFKMVSFSSAKNRVEVGEKFVELGLVSFLLESIVDGEKGVCEKALGVLDCLCDCKKGKEVVKMNALTLPLVIKKILRVSPLASSFAVGVVRKMCEKKEEGVLIEVIQLGGFQKLLVMLQVGCEEKTKENVTELLKMLNGYRSKAECVESSLEFKYLKN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi159g00016 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 110 IPR013083 -
Vivi159g00016 433 PANTHER WDSAM1 PROTEIN 28 423 IPR045185 GO:0061630
Vivi159g00016 433 CDD RING-Ubox_PUB 34 85 IPR045210 -
Vivi159g00016 433 FunFam RING-type E3 ubiquitin transferase 27 109 - -
Vivi159g00016 433 Gene3D - 118 425 IPR011989 -
Vivi159g00016 433 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Vivi159g00016 433 SUPERFAMILY ARM repeat 149 412 IPR016024 -
Vivi159g00016 433 SUPERFAMILY RING/U-box 29 109 - -
Vivi159g00016 433 Pfam U-box domain 33 104 IPR003613 GO:0004842|GO:0016567
Vivi159g00016 433 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi159g00016 30 432 U-box Gene Family AT5G37490 47.458 7.67e-114 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi159g00016 - - gmx:548086 589.341