Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi159g00015 ATGAAACCAAGTTTTGATCTTGAAGTAGAGCCCACCACAGAATATGAATCGGAAGTAAGTAGCGATGTTGCTTCCAATATATCCGTCCATGGATTAGAAACCTCTCCACGTTCCTATAGTAACAGCTTCACCAACAACTCCAACATTACAAATCCAAGAGAGTTTCATCCGTACTCAAATCCTATCTCGCTCGACTTAACACTCAATTTCAACAACAACAACAACGACTTGGTTCCGAGAGATTCAACAGGGTTCTCATTCTCAAGCACCAGTGAGAGCAGCAATGAACCTACCATCAACCCAAGAGTCTTCTCTTGCAATTACTGTCACCGCAAGTTTTACAGCTCTCAGGCGCTCGGTGGACACCAAAACGCACACAAGAGAGAAAGAATTATAGCAAAGCGAGCTATGCGAATGGGACTATTCTCTGAGAGGTATGCAAGTTTGGCATCTCTCCCTCTCAATGGTTCTTTCAGGTCCTTAGGTATAAAATCACACTCTTCACTACACCATGGTTTTTCGCCACCAACAATAAGGCCTAGTTCCGACATAAAAAGTAACGCGAGATTCAAGCAAGGATGTATCGGTCATCCGATATTCTTGGAGGATGATGAGACTGAGCTATTGTGGCAAGGTAGTTTCCATCAGGCGACCGAGGGAGGTAGTAGTAATACTCATCAGAGTTCAAATCTGTGCTTTACCGAGGTGAATGCGAAACCATTGGTTGATAACATAGAGAATTCACCACCTGAATTAACACTGAAACTTTGA 771 0.4319 MKPSFDLEVEPTTEYESEVSSDVASNISVHGLETSPRSYSNSFTNNSNITNPREFHPYSNPISLDLTLNFNNNNNDLVPRDSTGFSFSSTSESSNEPTINPRVFSCNYCHRKFYSSQALGGHQNAHKRERIIAKRAMRMGLFSERYASLASLPLNGSFRSLGIKSHSSLHHGFSPPTIRPSSDIKSNARFKQGCIGHPIFLEDDETELLWQGSFHQATEGGSSNTHQSSNLCFTEVNAKPLVDNIENSPPELTLKL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi159g00015 256 MobiDBLite consensus disorder prediction 1 21 - -
Vivi159g00015 256 Gene3D Classic Zinc Finger 83 150 - -
Vivi159g00015 256 SUPERFAMILY beta-beta-alpha zinc fingers 101 131 IPR036236 -
Vivi159g00015 256 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 24 184 IPR044246 GO:0009788
Vivi159g00015 256 FunFam Zinc finger protein 2 81 150 - -
Vivi159g00015 256 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Vivi159g00015 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi159g00015 97 256 C2H2 Transcription Factor Family AT1G66140 50.000 2.76e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi159g00015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi159g00015 - - gmx:100794851 303.523