Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi158g00030 ATGAGTAGTTTCAATGATGATCCAAACCATGATGATCATGGTTTTTATCCATTTGGAAATTTTGATCATGGATCAAGTCAAAGCAACTTCAACAAAAAAATATTGTTAACCGCAATATGTTCTTTAGTACTAGTATTGATTTTGGTCTTGGCTCTTCATCTCTATGCAAGGTATGTTCTCAAACGCCAAGCTCGCCGGAGGGCCGCCATTCATCAACTCAGCCTCACCGTGGCTCATGCTCACGTTCAATTCTCCGATCCATCAAACAGCGGGCTCGATCCAACGCTCATCGCCAGTCTTCCCACTTTCCTCTTCAAACAAAAACAAATACAAGATGAAGAACAAAACAAAGATGTTTCTAATAATATTGTTGAATGTGCGGTGTGTTTGAGTTTGATAGAAGATGGAGAAATGATGAGGTTGCTTCCTAATTGTAAGCATAGTTTCCACGTGGCTTGTATCGATATGTGGTTAGCTTCGCATTCCACTTGTCCAATTTGTCGAACCAAGGTTGAACCGCGGCTTGAGCCAGAGACTCGCGAAGGTCCCATTTGGTTTAAACCATCATCTGAAAGTACTTCAGATGGTGGTGATTCTATTAGTGATTCCTCCAAAAACATTTTTCGATTAAGTTCTTTTCAGAGGATTCTTACTCGAGATAGATCTTCGAGAAGAATTCAACCTTCTAATAGTATTCGTGCTGATAATCTCAATGATCGTGATTTAGAGAGGCAGTGA 738 0.4024 MSSFNDDPNHDDHGFYPFGNFDHGSSQSNFNKKILLTAICSLVLVLILVLALHLYARYVLKRQARRRAAIHQLSLTVAHAHVQFSDPSNSGLDPTLIASLPTFLFKQKQIQDEEQNKDVSNNIVECAVCLSLIEDGEMMRLLPNCKHSFHVACIDMWLASHSTCPICRTKVEPRLEPETREGPIWFKPSSESTSDGGDSISDSSKNIFRLSSFQRILTRDRSSRRIQPSNSIRADNLNDRDLERQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi158g00030 245 MobiDBLite consensus disorder prediction 220 235 - -
Vivi158g00030 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 174 IPR013083 -
Vivi158g00030 245 Pfam Ring finger domain 125 168 IPR001841 -
Vivi158g00030 245 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Vivi158g00030 245 SUPERFAMILY RING/U-box 96 174 - -
Vivi158g00030 245 MobiDBLite consensus disorder prediction 220 245 - -
Vivi158g00030 245 SMART ring_2 126 167 IPR001841 -
Vivi158g00030 245 MobiDBLite consensus disorder prediction 178 204 - -
Vivi158g00030 245 CDD RING-H2_EL5-like 125 168 - -
Vivi158g00030 245 FunFam E3 ubiquitin-protein ligase ATL6 80 174 - -
Vivi158g00030 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 199 - -
Vivi158g00030 245 MobiDBLite consensus disorder prediction 186 204 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi158g00030 9 226 C3H Transcription Factor Family AT2G42360 44.444 6.22e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi158g00030 K19038 - qsa:O6P43_000799 219.164