Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi158g00019 ATGAACAATAGAGAAATAATTTCAAATGGTTTACTTCATGAAAACACAACAAGCTCATCAAATGATAATCTTCCTGTTTTAAAGAGGAAGAGAAACCTCCCCGGAAATCCTGATCCTGAAGCTGAAGTGATATCTTTATCACCAAAAACATTGATGGCAACAAACAGATTTGTTTGTGAAATTTGTCTAAAGGGGTTTCAAAGGGATCAAAACCTTCAACTTCATCGACGCGGGCATAACCTTCCTTGGAAGCTGAAACAAAGAACAAACAAAGAAATAAGGAAGAGAGTGTATGTGTGTCCAGAGAAGAGTTGTGTTCACAATCATCCTTCAAGGGCTTTAGGAGACTTAACTGGGATAAAGAAGCACTTTTGTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGTTTTATGCTGTTCAATCGGATTGGAAAGCACACTCAAAGACTTGTGGTACGAGAGAATACAAATGTGACTGTGGCACTGTCTTTTCAAGGAGGGATAGTTTTGTGACTCACAGGGCATTCTGTGAAGCCTTAACAGAAGAAACAGCTAGAATAAACGGATCAACAAACTCATTACTAGCAATGGGAGGTTACAACAACATCATGCAAAATTCTCTTGTCCCAACTCATTTTTCTTCAATTTTCAAGCCAATTTCATGCACAGATCAAGCATCTAGATCAGGTCTATCCCTTTGGATGTCTCAAACATCTCAGGATGATTTTCATGACACAATGGCCAATAATAACAGCAATTTGCATGAGATTCATCAACTTGAAAACCCACAACCAAACTCTAATTATCATCTAAATTGGGTTTATGGAAATAAACTATCTTCTAATATTGGTTCCCAAGAGTTAACTAGCACTGTTTCACTTCCAATGGTCAATAGTAACAACAACATTGATAAGGATAGTGTAACTGCAAGTGCAAACAATCTTGTTAGTGTTCCTTCCTTATATAGCTCACAACACCAACCTCAATCTCATATTCAAACATCTTCAGCAAACATGTCAGCAACAGCTTTGTTACAAAAAGCTTCTCAAATTGGAGCATCTTCAAGTGACTCATTGTTCTTTGGAGGTTTAGGACCTTTGGGATGCAATACTCCAAATCAAGATCATAGGAACAAATTTTGTGGGGTGTATAATTCAAACTCAGTACTCACAACAAGCCATGAGACAGAAGGTAACTATTCAGGTGAATTGTCACAAATGCCCCCGACAAAACGGCGACGCATGCATAATGAAGAGAGTGTGTGGGGACAAACTAGGGATTTCCTTGGTGTTGGTGGTGCTAACCCTTTGCATCCTTTCATCAATCAACGGATGGATTTAATTTGA 1359 0.3856 MNNREIISNGLLHENTTSSSNDNLPVLKRKRNLPGNPDPEAEVISLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIRKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFVTHRAFCEALTEETARINGSTNSLLAMGGYNNIMQNSLVPTHFSSIFKPISCTDQASRSGLSLWMSQTSQDDFHDTMANNNSNLHEIHQLENPQPNSNYHLNWVYGNKLSSNIGSQELTSTVSLPMVNSNNNIDKDSVTASANNLVSVPSLYSSQHQPQSHIQTSSANMSATALLQKASQIGASSSDSLFFGGLGPLGCNTPNQDHRNKFCGVYNSNSVLTTSHETEGNYSGELSQMPPTKRRRMHNEESVWGQTRDFLGVGGANPLHPFINQRMDLI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi158g00019 452 Gene3D Classic Zinc Finger 90 181 - -
Vivi158g00019 452 MobiDBLite consensus disorder prediction 1 26 - -
Vivi158g00019 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vivi158g00019 452 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vivi158g00019 452 FunFam protein indeterminate-domain 12-like 36 104 - -
Vivi158g00019 452 MobiDBLite consensus disorder prediction 1 39 - -
Vivi158g00019 452 MobiDBLite consensus disorder prediction 398 417 - -
Vivi158g00019 452 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Vivi158g00019 452 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Vivi158g00019 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 439 IPR031140 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi158g00019 23 436 IDZ Gene Family AT1G03840 49.348 6.00e-131 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi158g00019 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi158g00019 K25870 - gmx:100778666 598.586