Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi158g00013 ATGCTAGCTGTATCACCATTGATGAACACAAGAGATGAGAGCCAAAGAGAGATGGAGGAAAGTTTATCAATTGAAACATGTGATTTTGCTGATCTTTCCGAAGGGACTTTACTGGAAAGCATCAACTTCGAATTCGACGATGATTTCTTCGTGTGTTTCGACGAAGGAGACGTGTTACCGGATCTTGAGATGGACCCGGAAATGCTTGCTGAGTTTTCACTCAGCGGGGGCGAGGAATCGGAGATGAATTCGTCGATAACGATGGTGGATAATAACAAGTTTTGTGATGATCATCATGATGGGAATAATATAGTTAGTGTTGAGAAAAAATTGCAAGAGGAAGAGAAACAAGGGTCTTCTTCGGATTCGGGTTCGAGCCGTGGGGAGGAAATTGTTAGCAGAAGAGATGAATCTGTGGTGGTGAATCCATTGCCTAAAGAAAATGAAAAAGGAAGAAAATCATCATCTTCTTCTCAAAAGAATAATCATCAAGGAAAGAGAAAAGTGAAGGTGGATTGGACACCAGATTTGCATAGAAGATTTGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCGGTACCTTCAAGAATTTTAGAAATCATGGGAATCGACTGCCTTACTCGCCACAACATCGCGAGCCACCTTCAAAAATATCGATCTCATAGGAAGCATTTGCTTGCGCGTGAAGCGGAAGCTGCGAGCTGGACTCAGCGGAGGCAATTGTCTTGCAAGAGAGATGTGAACCATTGGGTTGCACCAACTATGGGTTTTCCTCCGATGACACCACCGGTGCATCATTTTAGACCTTTACATGTGTGGGGGCACCATCACATGGATCAGTCCTTTATGCATATGTGGCCTAATTATTCGCCGCACCATCCACCGCCTAATTGGGCGCCTCCAAGGCCGGCTCCGCCTCCTAACCCTTCGTATTGGCACCAACGGGCTCAAAACACACCAACCGCAGGAACACCGTGCTTTCCACAGCCTCTGACAACAACGAGATTTGCCTCTCCAACTGTTCCAGGCATTCCTCCACCCCATGCAATATACCAAGTAGATCCCGGCATGACCGTCCCCGCCGCTCAACCGTCTCCTCCGCCACACTTAGACTTCCATCCGTCAAAGGAGAGCATAGACGCAGCTATTAGTGATGTATTATCGAAACCATATTTACCATTGCCTCTTGGTCTTAAAGCTCCTGCACTTGAAGGTGTGATGGGTGAGTTACAGAGACAAGGAATTCCAAAAATTCCACCCTCTTGTGCTTGA 1275 0.4643 MLAVSPLMNTRDESQREMEESLSIETCDFADLSEGTLLESINFEFDDDFFVCFDEGDVLPDLEMDPEMLAEFSLSGGEESEMNSSITMVDNNKFCDDHHDGNNIVSVEKKLQEEEKQGSSSDSGSSRGEEIVSRRDESVVVNPLPKENEKGRKSSSSSQKNNHQGKRKVKVDWTPDLHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWTQRRQLSCKRDVNHWVAPTMGFPPMTPPVHHFRPLHVWGHHHMDQSFMHMWPNYSPHHPPPNWAPPRPAPPPNPSYWHQRAQNTPTAGTPCFPQPLTTTRFASPTVPGIPPPHAIYQVDPGMTVPAAQPSPPPHLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQRQGIPKIPPSCA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi158g00013 424 FunFam Two-component response regulator 164 227 - -
Vivi158g00013 424 MobiDBLite consensus disorder prediction 312 329 - -
Vivi158g00013 424 SUPERFAMILY Homeodomain-like 166 225 IPR009057 -
Vivi158g00013 424 Gene3D - 165 226 - -
Vivi158g00013 424 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 423 IPR044825 GO:0003700|GO:0045893
Vivi158g00013 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 168 222 IPR006447 GO:0003677
Vivi158g00013 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 224 IPR017930 -
Vivi158g00013 424 MobiDBLite consensus disorder prediction 128 156 - -
Vivi158g00013 424 MobiDBLite consensus disorder prediction 298 329 - -
Vivi158g00013 424 MobiDBLite consensus disorder prediction 111 171 - -
Vivi158g00013 424 Pfam Myb-like DNA-binding domain 171 220 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi158g00013 1 330 G2-like Transcription Factor Family AT5G44190 39.833 7.68e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi158g00013 Myb_DNA-binding 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi158g00013 - - gmx:100775671 560.451