Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi158g00011 ATGGCTTCGTTATTCAAGGATCCGGCGAAGCTCTCGGCGTACCGAGACAGAAGGTTCCCTGGAAATCAAGAAGAGTTTGAGCATGCTCTGATAACTTCTTCTACCGTTTATGTTGGGAACATGTCGTTTTACACTACTGAAGAGCAAATTTATGAACTGTTTTCTCGAGCTGGTGAAATTAAGAAGATCATCATGGGTTTGGATAAGAATACTAAAACTCCTTGCGGTTTTTGCTTTGTTTTATATTACTCTCGTGAAGATACTGAGGATGCTTGCAAATATATAAGCGGGACGATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTCCAGGAGGGAAGACAATGGGGGCGCGGTCGTAGTGGTGGCCAGGTGCGTGATGAATATCGTACTGATTATGATCCAGGCAGGGGTGGATATGGGAAGTTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTACGGCACTGGTTCTTTGGGATCTTTTCCGCCAGTTATTCCTTCTTATGGTAGACACGGTGGTGGTCATGGTCACGGTGGTGGCCATGGTCATGGTGGTGGTCATCGGCATGGTAGAGATTACCCTAGGAAGAGATACAGAGACGATGACCGCCGCACATACGAGCCCTCAAAAAGAACATCAGACCATGAATCTCGGAGGAACTCTGACCAAGAATCTAGACCGGAAAAAAATCCACGATTTCGAGAGAGTGGTGATTCTGATGACGAGGAGGAAGATGATAGAAAAAGACGGGGTTAA 777 0.4582 MASLFKDPAKLSAYRDRRFPGNQEEFEHALITSSTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVIPSYGRHGGGHGHGGGHGHGGGHRHGRDYPRKRYRDDDRRTYEPSKRTSDHESRRNSDQESRPEKNPRFRESGDSDDEEEDDRKRRG 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi158g00011 258 MobiDBLite consensus disorder prediction 124 138 - -
Vivi158g00011 258 MobiDBLite consensus disorder prediction 120 140 - -
Vivi158g00011 258 CDD RRM_NCBP2 36 113 IPR034148 -
Vivi158g00011 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Vivi158g00011 258 Gene3D - 6 150 IPR012677 -
Vivi158g00011 258 SMART rrm1_1 35 108 IPR000504 GO:0003723
Vivi158g00011 258 MobiDBLite consensus disorder prediction 201 258 - -
Vivi158g00011 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Vivi158g00011 258 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 154 IPR027157 GO:0000339|GO:0005846|GO:0045292
Vivi158g00011 258 SUPERFAMILY RNA-binding domain, RBD 23 144 IPR035979 GO:0003676
Vivi158g00011 258 MobiDBLite consensus disorder prediction 163 258 - -
Vivi158g00011 258 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi158g00011 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 27.273 1.33e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi158g00011 K12883 - gmx:100776217 404.831