Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1566g00004 ATGGGCAAGTCAAGCAAGAAATCCGCCACCAAGGTTGATGCTGCTCCCGTTGTCGTTTCACCAGTCAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGTTAAGAAAGTGAGTGCTAAGAAGCAGAAGGTTGAGGAGGTTGTTGCCAAGCAAAAGAAGGAAGCTTTGATTCAGAAAGCTAAGGAGGAAAGCAGTTCAGAGGAAGTATCATCTGAATCTGAGGATGAGAAACCTGCTGTGAAAGCTGCTGCTCCTGTCAAGAAGGCACCGGCTAAGAATGGGAATGCTAAGAAAGCCAAGCCAGAGTCCAGTTCTTCAGACTCTGGGTCTGATGAGGAAGACACCTCAGATGAAGAGGATGAGAGTGCAAAGAAGCCGGCACCAAAGAAAGCTGAGGTTGCTGTTAAACCTAAGCAGGCACCAAAGAAAGAGGAAAGTTCTGAGGAATCAGATGAGGACTCTGAGGAAGGTTCCTCTGAAGACGAGAAACCTGCACCAAAATCTGTCCCTGCTAAAAATGGGAGTGCCCCAGCAAAGAAAGCTGCTAGTTCTTCTGATGAGGAATCTGAAGAAGATTCTTCTTCTGATGAAGAAGCACCAAAAGCTAAGGCTGCCCCTGCTGCTGTGAAGCCTGCTGCTGCAAAGAAGCCAGACTCTGATAGCTCAGATGAGTCTGATTCTGATGATGATGAGGATACCAAGCCTGCTGTGAAGCCTGCTGTTGCCAAGAAGGCCGACGATGATGATGAAGATAGCAGTGAAGATGATGATAGCAGCTCTGATGAAGACAATAAAACATCCAAAGCTTCTAATGGAAACAAGAAGCCAGTGACTGTCTCTAAGAAAGAGGACAAGATGAATGTTGACAAGGATAGCAGTGATAGTTCTGAGGAAAGTGACAGCGATGAGGAGAGCGAAGAAGAACCATCCAAAACACCTCAGACAAAGACTAAGGATGTGGAGATGATTGATGCTGACAAATCTTCAAAGAAAGCCCCTGCTACCCCAGCTACACCAAATGAGAGTGGAGGTTCAAAGACCTTATTTGTTGGAAATCTGTCATTCAAAGTCGAGCGAACTGACATTGTAAATTTCTTTCAAGAATGCGGAGAAGTTGTTGATGTCCGTCTTGCTTCAGATGAGGATGGAAGATTTAAAGGCTTTGGACATGTTGAGTTTGCGACTGCAGAGGCAGCTCAAAGTGCACTTGAGTTGAATGGACAAGAATTATTGCAAAGAGCTGTCCGACTTGATTTAGCTCGGGAAAGGGGAGCTTACACTCCAAATAGTAACAGCAACTTCTCTGCTGGTGGTAGAGGCCCGTCTCAAACTGTATTTGTCAGGGGTTTTGATAAATCTCTTGGGGAGGATGAGATCAGAGCTAAATTGGAGCAACATTTTGCTTCTTGCGGGCAGGCTTCAAGAGTGTCAATCCCAAAAGATTATGATTCTGGCTATGTGAAGGGGTTTGCATACATGGACTTCAAAGATTCAGATAGCTTTAACAAAGCTCTAGAACTCCATGAAAGCGAACTTGATGGTTACTCTTTGTCAGTGGATGAAGCCAAACCTAGAGATAGTCAAGGTCCACCAAGCGGCGGTGGAGGTCGTTTTAGTGACAGGGGTCGTGGTAGAGGTCGTGGTCGGAACTCTGGAGGTCGGTTTGACAGGAATGGCTCTGGAGGTCGGTTCCCTGGAAGGGATGGCGGCGGTAGAAGGGGTCGTGGTCGTTCTGGATACAATAAACCAACCTTTGCTTCAGAAGGAAAAAAGACTACTTTTGCCGACGACTAG 1800 0.4639 MGKSSKKSATKVDAAPVVVSPVKSGKKGKRQAEEEVKKVSAKKQKVEEVVAKQKKEALIQKAKEESSSEEVSSESEDEKPAVKAAAPVKKAPAKNGNAKKAKPESSSSDSGSDEEDTSDEEDESAKKPAPKKAEVAVKPKQAPKKEESSEESDEDSEEGSSEDEKPAPKSVPAKNGSAPAKKAASSSDEESEEDSSSDEEAPKAKAAPAAVKPAAAKKPDSDSSDESDSDDDEDTKPAVKPAVAKKADDDDEDSSEDDDSSSDEDNKTSKASNGNKKPVTVSKKEDKMNVDKDSSDSSEESDSDEESEEEPSKTPQTKTKDVEMIDADKSSKKAPATPATPNESGGSKTLFVGNLSFKVERTDIVNFFQECGEVVDVRLASDEDGRFKGFGHVEFATAEAAQSALELNGQELLQRAVRLDLARERGAYTPNSNSNFSAGGRGPSQTVFVRGFDKSLGEDEIRAKLEQHFASCGQASRVSIPKDYDSGYVKGFAYMDFKDSDSFNKALELHESELDGYSLSVDEAKPRDSQGPPSGGGGRFSDRGRGRGRGRNSGGRFDRNGSGGRFPGRDGGGRRGRGRSGYNKPTFASEGKKTTFADD 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1566g00004 599 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 119 490 - -
Vivi1566g00004 599 SUPERFAMILY RNA-binding domain, RBD 340 443 IPR035979 GO:0003676
Vivi1566g00004 599 CDD RRM1_NUCLs 349 425 IPR034349 -
Vivi1566g00004 599 Gene3D - 432 563 IPR012677 -
Vivi1566g00004 599 MobiDBLite consensus disorder prediction 279 296 - -
Vivi1566g00004 599 MobiDBLite consensus disorder prediction 122 149 - -
Vivi1566g00004 599 MobiDBLite consensus disorder prediction 26 84 - -
Vivi1566g00004 599 MobiDBLite consensus disorder prediction 233 249 - -
Vivi1566g00004 599 MobiDBLite consensus disorder prediction 310 330 - -
Vivi1566g00004 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 447 519 IPR000504 GO:0003723
Vivi1566g00004 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 417 IPR000504 GO:0003723
Vivi1566g00004 599 Gene3D - 277 431 IPR012677 -
Vivi1566g00004 599 SUPERFAMILY RNA-binding domain, RBD 443 555 IPR035979 GO:0003676
Vivi1566g00004 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 445 526 IPR000504 GO:0003723
Vivi1566g00004 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 424 IPR000504 GO:0003723
Vivi1566g00004 599 MobiDBLite consensus disorder prediction 521 599 - -
Vivi1566g00004 599 FunFam Nucleolin 2 323 432 - -
Vivi1566g00004 599 Coils Coil 29 56 - -
Vivi1566g00004 599 MobiDBLite consensus disorder prediction 1 348 - -
Vivi1566g00004 599 SMART rrm1_1 349 420 IPR000504 GO:0003723
Vivi1566g00004 599 SMART rrm1_1 446 522 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1566g00004 346 519 Eukaryotic Initiation Factors Gene Family AT1G22760 26.923 4.79e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1566g00004 K11294 - ahf:112789008 332.798