Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1566g00002 ATGTACTTGAGGAGAATACAGTGCCGAGATCGGAGATGGGCTTTGTTGTTGCAACCATCAAAATACTTTTTTAGGCCGAAATTCTCGGATCATCATTGTTTTCAGTCTTTATCACCTAAGACTACCGTGAGAGAATATTCTTCACATGGTGGTATTATCAAAAGAGATCTCTTAGGTTCAGATTCATGTAGTAGTGTTTCATCTAGATATAGTTTTACCGGCCTGAACAAAAGGCCTAGTTTTTGTCTTAGGAGTACTCAGATACGAGGTTTTAGTTCGGAAAGTGATGGAAGTAGTGCAAGTGAGAATAAACAAGTACATGTGAATGATGGAGGTGATTTGGATAAGGGGAAGAATCAGCTAGGTAAGGCTGGTGGAGATGTTAAATGCAGCAATACACATGCACAGCTTGGAGAACAGGATCAGGAGGAATGGCTTCTTAATGAGAAGCTTGCTGTAGAAAGTAAAAGGAGAGAATCGCCATTTTTGACGAGAAGGGATAAGTTTAAAAATGAGTTTCTGAGAAGAATTACTCCATGGGAGAATATAAACATTTCGTGGGACACATTTCCTTATCACATAAATGAGCATACGAAAAGTCTTCTTACGGAATGTGCTGCTTCCCGTTTGAGACATAATAAGCTTGCTTCGTCTTTTGGCACCCGCCTTGCATCTTCAAGTGGAAGAATATTGCTTCAAAGTATTCCAGGCACTGAGCTCTATCGGGAAAGATTAGTTAGAGCTCTTGCACAAGATTTACAAGTACCGTTGTTGGTGCTTGACAGCAGCATCCTTGCTCCTTATGATATTGATGATGATCAATCGTCAGACTATGAGTCTGATGATGATAATGCAGAATCTGGGGATGAGGGTGGTTTAGAATGTGAGAATGAGGATGATAACGATGCTAGTAATGAAGAAGAGTGGACTAGCAGTGCTGAAGCGAAGTCAGATGCAAGCGATAATGAAGATGCACTAGCATCTGCTGAAGCAGCTCTTAAGAAAGTTAAAGCTGCTGTTCAGAAACTTATCCCTTACAATGTTGATGAATTTGAGAAGATGGTGACTGGAGATGAGAGTCCCGAGTCATCGAATTCTGATGATACCAAGTCAACTGATAAATCTGGATCTCAGCTAAGAAAAGGTGACCGCGTGAAGTACATCGGCCCTTCTATTAAATTTACAAATGATGATAGGGTTTCAATTTTAAATAATGGTCAAAGGGGAGAGGTATACGATGTAAATGGAGATCAAGCTGCGGTTATCTTAGATGATAATGTAGAGAAGGCCAATGAGAATGAGGTCGAGAACCCTAACAATGATCGTCCAAAAGCATCAGTTTATTGGATAAATGTTAAGGACATTGAGAACGATCTTGATGCTCAAACACAGGATTGCTACATAGCAGTGGAAGCTTTATGTGAGGTTTTGAATTCCAAACAACCTCTTATAGTATATTTTCCGGATAGTTCACAGTGGTTGCATAAATCACTTCCTAAGTCAAGCCGAAATGAGTTTTTTCAAAAGGTTGAAGAGATGTTTGACCGGTTATCTGGCCCTGTAGTATTGATTTGCGGGCAAAACAAAGTTCATTCTGGAACAAAGGAGAAAGAAAAATTTACGATGATACTCCCAAACATTGGACGTGTTGCTAAGCTGCCTCTTTCTTTGAAGCACCTGACTGATGGATTTAAAGGGGGAAAGACATCAGAAGAGGATGATATTAACAAGCTTTTCTCTAATGTTTTGAGTGTACATCCACCTAAGGAGGAGAATCTACAGGTAGTATTCAAAAAACAACTCGAGGAAGACAGGAAAATTGTGATTTCTCGTAGTAATTTGAATGAACTACGAAAGGTTCTTGAAGAACACCAGCTATCATGCGTTGACCTCTTGCAAGCGAATACTGATGGCATCATTTTAACAAAGCAAAAAGCTGAGAAAGTGGTAGGCTGGGCAAAAAACCATTACTTGTCATCATGCTTGCTTCCTTCTGTTAAAGGAGAAAGATTGTGCATACCTCGCGAAAGTCTTGAAATTGCAATCTCAAGGATGAAAGGCATGGAAACTATGTCACGAAAACCTTCTCAGAACCTCAAGAGCCTTGCAAAGGATGAGTTTGAGAGCAATTTCGTTTCATCGGTTGTACCTCCTGGTGAAATTGGGGTGAAGTTCGATGACATAGGTGCTCTTGAAGATGTTAAGAAGGCACTTCAGGAACTTGTTATTCTTCCAATGAGAAGGCCCGAGCTTTTCACTCGTGGAAACCTGTTGCGGCCCTGCAAAGGAATATTGCTTTTTGGTCCTCCTGGAACTGGGAAAACTCTTCTGGCCAAGGCACTTGCAACAGAAGCCGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAGAAACTAACCAAAGCACTTTTCTCATTTGCCAGCAAGCTTGCACCTGTCATTATATTTGTTGATGAGGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCATGGGATGGATTGAGGTCCAAAGAGAATCAAAGAATCCTCATTCTTGGTGCAACAAACAGGCCATTTGACCTTGATGATGCTGTTATCCGTCGTTTACCAAGAAGGATCTATGTTGATTTACCTGATGCTGAAAACCGAAAGAAGATTCTAAGAATATTTCTTGCAAAAGAAAATCTGTACTCCGATTTTCAGTACGACGAACTTGCTAACTTGACCGAAGGATACTCTGGCAGTGATTTGAAGAACCTCTGTGTTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAAGAAGAAAGGAAGCGAGACAATGATACTACAAATTCAGTATTAAGGCCTCTTAATTTGGAAGATTTTGTGCAAGCAAAATCCAAGGTTGGTCCATCTGTTGCGTATGACGCAACAAGCATGAATGAGTTGAGGAAGTGGAACGAAATGTACGGCGAAGGCGGAAGTAGAGCAAAATCACCATTTGGATTTGGGAGCTGA 3054 0.41 MYLRRIQCRDRRWALLLQPSKYFFRPKFSDHHCFQSLSPKTTVREYSSHGGIIKRDLLGSDSCSSVSSRYSFTGLNKRPSFCLRSTQIRGFSSESDGSSASENKQVHVNDGGDLDKGKNQLGKAGGDVKCSNTHAQLGEQDQEEWLLNEKLAVESKRRESPFLTRRDKFKNEFLRRITPWENINISWDTFPYHINEHTKSLLTECAASRLRHNKLASSFGTRLASSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDSSILAPYDIDDDQSSDYESDDDNAESGDEGGLECENEDDNDASNEEEWTSSAEAKSDASDNEDALASAEAALKKVKAAVQKLIPYNVDEFEKMVTGDESPESSNSDDTKSTDKSGSQLRKGDRVKYIGPSIKFTNDDRVSILNNGQRGEVYDVNGDQAAVILDDNVEKANENEVENPNNDRPKASVYWINVKDIENDLDAQTQDCYIAVEALCEVLNSKQPLIVYFPDSSQWLHKSLPKSSRNEFFQKVEEMFDRLSGPVVLICGQNKVHSGTKEKEKFTMILPNIGRVAKLPLSLKHLTDGFKGGKTSEEDDINKLFSNVLSVHPPKEENLQVVFKKQLEEDRKIVISRSNLNELRKVLEEHQLSCVDLLQANTDGIILTKQKAEKVVGWAKNHYLSSCLLPSVKGERLCIPRESLEIAISRMKGMETMSRKPSQNLKSLAKDEFESNFVSSVVPPGEIGVKFDDIGALEDVKKALQELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRKKILRIFLAKENLYSDFQYDELANLTEGYSGSDLKNLCVAAAYRPVQELLEEERKRDNDTTNSVLRPLNLEDFVQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRAKSPFGFGS 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1566g00002 1017 MobiDBLite consensus disorder prediction 270 323 - -
Vivi1566g00002 1017 Gene3D - 723 999 IPR027417 -
Vivi1566g00002 1017 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 168 1010 - -
Vivi1566g00002 1017 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 722 898 - -
Vivi1566g00002 1017 MobiDBLite consensus disorder prediction 92 130 - -
Vivi1566g00002 1017 MobiDBLite consensus disorder prediction 272 307 - -
Vivi1566g00002 1017 MobiDBLite consensus disorder prediction 355 381 - -
Vivi1566g00002 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 723 988 IPR027417 -
Vivi1566g00002 1017 SMART AAA_5 760 897 IPR003593 GO:0016887
Vivi1566g00002 1017 ProSitePatterns AAA-protein family signature. 867 886 IPR003960 GO:0005524|GO:0016887
Vivi1566g00002 1017 MobiDBLite consensus disorder prediction 309 323 - -
Vivi1566g00002 1017 Gene3D - 896 981 - -
Vivi1566g00002 1017 Pfam ATPase family associated with various cellular activities (AAA) 764 894 IPR003959 GO:0005524|GO:0016887
Vivi1566g00002 1017 Pfam AAA+ lid domain 917 953 IPR041569 -
Vivi1566g00002 1017 Coils Coil 614 634 - -
Vivi1566g00002 1017 MobiDBLite consensus disorder prediction 355 382 - -
Vivi1566g00002 1017 MobiDBLite consensus disorder prediction 92 106 - -
Vivi1566g00002 1017 MobiDBLite consensus disorder prediction 108 122 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1566g00002 758 959 Calmodulin-binding Proteins AT3G56690 35.749 6.46e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1566g00002 - - gmx:100812718 1591.25