Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1563g00002 ATGAGAAGGAGAGTGAAACTTGCATTTATGGTCAACGATTCCGCAAGGAATATAACTTACACCAAAAGAAAAAAGAGTCTAATCAAAACGATTGATGAACTTGCAACTCTTTGTGAAATTGAAGCTTGTGCTATAGCTTATAGCGACTTTCATCCAAAGACGGAGATTTGGCCTTCCTCGTGGGAGGTCCAAGGAGTCGTTACAAAGTTTAGAAGTTATTCTGATTTTGAGAAAGGTAACAAGATGCTGAACAAAAAGAGTTTTTTGATGCAAAGGATTGTGAAATCTAAAGAACAATTGGTGAAATTGCAGAAAAGCAATTGGGAGGTGGATAAGTCATTGATCTTATTTCAATGTCTTGTCAAAGAAAACTTTATCGACACTTTGAATACAAATACTTTGAATGACCTAACATATGATATTAATGAGAAGCTGAAGAAAGTTACTTCAAAGATAAATGAACTGGATACAAATGTAACCATCTAA 486 0.3436 MRRRVKLAFMVNDSARNITYTKRKKSLIKTIDELATLCEIEACAIAYSDFHPKTEIWPSSWEVQGVVTKFRSYSDFEKGNKMLNKKSFLMQRIVKSKEQLVKLQKSNWEVDKSLILFQCLVKENFIDTLNTNTLNDLTYDINEKLKKVTSKINELDTNVTI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1563g00002 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Vivi1563g00002 161 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Vivi1563g00002 161 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Vivi1563g00002 161 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Vivi1563g00002 161 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi1563g00002 161 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi1563g00002 161 PANTHER MADS BOX PROTEIN 2 152 - -
Vivi1563g00002 161 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Vivi1563g00002 161 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Vivi1563g00002 161 Gene3D - 12 105 IPR036879 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1563g00002 2 152 Type I MADS-box Gene Family AT5G48670 43.709 2.85e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1563g00002 SRF-TF 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1563g00002 - - tpra:123904466 179.104