Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1563g00001 ATGAGAAGGAGAGTGAAACTTGCATTTATGGTCAACGATTCTGCAAGGAAGATAACTTACACCAAAAGGAAAAAGAGTCTAATAAAAAAGATTGATGAAATTACAACTCTTTGTGGGATTGAAGCTTGTGCTATAGTTTATAGCGATTTTCATTCGGAGCCAGAGATTTGGCCTTCCCCGTGGGAGGTCCAAAGAGTCGTTACAAAGTTTCGAAGTTATTCTGACTTTGAGAAAGGTAAGAAGATGCTGAACCAAGAGAGTTTTTTGATGCAAAGGATTGTGAAGTCCCAAGAACAACTGGCAAAATTGCAGAAAAGCAATTGGGAGGTGGAGAAGTCATTGATCTTGTTTCAATGTCTTGGTAAAGAAAACTTTATCGACACTTTAAACACAAATGCTTTGAATGACCTAGCATATGATATTAATGAGAAGCTGGAGAAAGTTACTTCAAAGATGAATGAACTAGATACAAATATAACCAATTAA 486 0.3621 MRRRVKLAFMVNDSARKITYTKRKKSLIKKIDEITTLCGIEACAIVYSDFHSEPEIWPSPWEVQRVVTKFRSYSDFEKGKKMLNQESFLMQRIVKSQEQLAKLQKSNWEVEKSLILFQCLGKENFIDTLNTNALNDLAYDINEKLEKVTSKMNELDTNITN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1563g00001 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Vivi1563g00001 161 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi1563g00001 161 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Vivi1563g00001 161 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi1563g00001 161 PANTHER MADS BOX PROTEIN 2 152 - -
Vivi1563g00001 161 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Vivi1563g00001 161 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Vivi1563g00001 161 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Vivi1563g00001 161 FunFam agamous-like MADS-box protein AGL80 12 96 - -
Vivi1563g00001 161 Gene3D - 12 107 IPR036879 GO:0003677|GO:0046983
Vivi1563g00001 161 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1563g00001 1 152 Type I MADS-box Gene Family AT1G65300 44.079 4.63e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1563g00001 SRF-TF 9.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1563g00001 - - tpra:123904466 209.534