Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1556g00004 ATGTTTCTTCATCACCGTCTCAGAACTCTGGTCTACTCCCAAACCCCAAAATGTCACCATCTTCAGAGATTCCACCACTCTTTCAATTCCTTCTCCACCGCCACTTCAGATTCATCTCAACAACCCTTCACAGTCTCCTACCTCACCAACAATCTCGGTTTATCTCCACAAGACGCTCTCAAAGCATCCAAACGCATCCATTTCACCACCCCCGAAAAACCCGATTCCGTCATCACCTTCTTCAAATCCCACGGTTTCTCCATTCCCCAAATCCAATCCATCATCCTCAAAGCCCCAACACTCTTATCATCCAACCCCACAACCATTCTCCCAAAGTTTCAATTTTTAGCCTCCAAAGGCGCTTCCCCCTCTGACATAGCCGCCACCGTCACCAGAAGCCCCCATTTCCTCAACTCAAGCCTCAAACGCATTATCCGTTCTTTTGAATTGGTAAGAAGTTTCTGTCCCTCTGATCAAAAAGCTATTACTTCAATCATATTCTGTCCCTCTTCCATTTCTGATATCCGAATGAAACCAAATCTTCAATTTTTACTCGATTCCGGTGTCACTCCTTCCAGCATTTACCGTTTGCTTAGTTCTAGACCTTCTGTAATTTGTTCTACTGATTTGAGAAAGGCTGTGGAGGAGATTAAGGGACTAGGGTTTCACCCTTCCAAATACAATTTCTGTTTGGCATTACTAGCCAAAAGGGCTGTCACTAAATCACAATGGGATGCCAAAATTGATGCATTCAAGTGTTGGGGTTTCTCTGAAGATGCAATTTTTGATGCATTTAAAAGGAACCCTAAGATTATGCTACTGTCTCCAGATAAACTCAACGCGGTCATGAGTTTTTGGATCAAACAGCTTGGTTGGGATCCTTCACTGCTTCTGCGAGCACCGGATCTTTTCGGATTTAGTATAAAGAAAAGGTTTATTCCGAGGGCTTCCGTTGTTACGTATCTACTTTCCAATGGTTTGATGAAGAAGGGTGCTAGCTTAATTACGCCATTTTATCTGTCTGATGAGTTGTTCCTGCAAAGGTATGTGAAATGTTTTGAGGATGAAGCGTCTAAGCTATTAAAGCTGTATCAAGGGTAG 1101 0.4314 MFLHHRLRTLVYSQTPKCHHLQRFHHSFNSFSTATSDSSQQPFTVSYLTNNLGLSPQDALKASKRIHFTTPEKPDSVITFFKSHGFSIPQIQSIILKAPTLLSSNPTTILPKFQFLASKGASPSDIAATVTRSPHFLNSSLKRIIRSFELVRSFCPSDQKAITSIIFCPSSISDIRMKPNLQFLLDSGVTPSSIYRLLSSRPSVICSTDLRKAVEEIKGLGFHPSKYNFCLALLAKRAVTKSQWDAKIDAFKCWGFSEDAIFDAFKRNPKIMLLSPDKLNAVMSFWIKQLGWDPSLLLRAPDLFGFSIKKRFIPRASVVTYLLSNGLMKKGASLITPFYLSDELFLQRYVKCFEDEASKLLKLYQG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1556g00004 366 Coils Coil 350 366 - -
Vivi1556g00004 366 Pfam mTERF 243 345 IPR003690 GO:0003690|GO:0006355
Vivi1556g00004 366 Pfam mTERF 79 222 IPR003690 GO:0003690|GO:0006355
Vivi1556g00004 366 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Vivi1556g00004 366 SMART mt_12 92 122 IPR003690 GO:0003690|GO:0006355
Vivi1556g00004 366 SMART mt_12 127 157 IPR003690 GO:0003690|GO:0006355
Vivi1556g00004 366 SMART mt_12 195 223 IPR003690 GO:0003690|GO:0006355
Vivi1556g00004 366 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Vivi1556g00004 366 Gene3D Transcription termination factor 3, mitochondrial 51 169 IPR038538 -
Vivi1556g00004 366 Gene3D Transcription termination factor 3, mitochondrial 170 363 IPR038538 -
Vivi1556g00004 366 PANTHER CGI-12 PROTEIN-RELATED 39 354 IPR003690 GO:0003690|GO:0006355
Vivi1556g00004 366 FunFam Mitochondrial transcription termination factor-like 140 357 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi1556g00004 mTERF 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1556g00004 K15031 - gmx:102666739 329.331