Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1556g00002 ATGTTTCTTCATCACCGTCTCAGAACTCTGGTCTACTCCCCAACCCCAAAATGTCACCTTCTTCAGAGATTCCACCACTCTTTCAATTCCTTCTCCACCGCCACTTCAGATTCATCTCAACAACCCTTCACAGTCTCCTACCTCACCAACAATCTCGGTTTATCTCCACAAGACGCTCTCAAAGCATCCAAACGACTCCGTTTCACAACCCCCGAAAAACCCAACTCCGTCCTCACCTTCTTCAAAACCCACGGTTTCTCCAATCACCAGATACAGTCCATCATCCTCAAGGCCCCTGCACTCTTATCATCCAACCCCACCAAAACCATTCTCCCAAAGTTCCAATTTTTAGCCTCCAAAGGCGCTTCCCCCTCTGACATAGCCGCCACCGTCACCAGAAGCCCCCATTTCCTCGGCTCAAGCCTGAAACGTATTATCCCTTCTTTTGAATTGGTAAGAAGTTTCTGTCCCTCTGATCAAAAAGCTATTACTTCAATCATATTTTGTCCCTCTTCCATTTCTGATATCCGAATGAAACCAAATCTTCAATTTTTACTCGATTCCGGTGTCACTCCTTCCAGCATTTACCGTTTGCTTTGTTCTAGACCTTCTGTAATTTGTTCTACTGATTTGAGAAAGGCTGTGGAGGAGATTAAGGAATTAGGGTTTGATCCTTCCAAATACAATTTTTGTGTGGCATTACTTGCTAAGAAGGCTATCTCTAAATCCCAATGGGATGCTAAAGTTGATGCCTTGAAGAGTTGGGGTTGTTCTCAAGATGTGATTTTTGATGCCTTTAAAAGACAGCCTAACTTTATGCTACGGTCGCCGGACAAGCTCAACGCGGTGATGCGGTTTTGGGTCGAGGAGCTTGGTTGGGATCCTTCATTGCTACTGGCAGCACCGGATCTTTTTGGATTTAGTATAAAGAAAAGGTTTATTCCGAGGGCTTCTGTTGTTAGGTATCTACTTTCCAATGGTTTGATGAAGAAGGATGCTAGCTTAGTAACGCCGTTTTATCCGTCCGATGAGTTGTTCCTGCAAAGGTATGTGAAACGGTTTGAGGATGAAGCATCTAGCCTTTTAAAGCTATATCAAGGGTAG 1104 0.4438 MFLHHRLRTLVYSPTPKCHLLQRFHHSFNSFSTATSDSSQQPFTVSYLTNNLGLSPQDALKASKRLRFTTPEKPNSVLTFFKTHGFSNHQIQSIILKAPALLSSNPTKTILPKFQFLASKGASPSDIAATVTRSPHFLGSSLKRIIPSFELVRSFCPSDQKAITSIIFCPSSISDIRMKPNLQFLLDSGVTPSSIYRLLCSRPSVICSTDLRKAVEEIKELGFDPSKYNFCVALLAKKAISKSQWDAKVDALKSWGCSQDVIFDAFKRQPNFMLRSPDKLNAVMRFWVEELGWDPSLLLAAPDLFGFSIKKRFIPRASVVRYLLSNGLMKKDASLVTPFYPSDELFLQRYVKRFEDEASSLLKLYQG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1556g00002 367 Coils Coil 351 367 - -
Vivi1556g00002 367 FunFam Mitochondrial transcription termination factor-like 141 358 - -
Vivi1556g00002 367 Gene3D Transcription termination factor 3, mitochondrial 170 363 IPR038538 -
Vivi1556g00002 367 Gene3D Transcription termination factor 3, mitochondrial 52 169 IPR038538 -
Vivi1556g00002 367 Pfam mTERF 78 224 IPR003690 GO:0003690|GO:0006355
Vivi1556g00002 367 Pfam mTERF 241 346 IPR003690 GO:0003690|GO:0006355
Vivi1556g00002 367 PANTHER CGI-12 PROTEIN-RELATED 39 353 IPR003690 GO:0003690|GO:0006355
Vivi1556g00002 367 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Vivi1556g00002 367 SMART mt_12 196 224 IPR003690 GO:0003690|GO:0006355
Vivi1556g00002 367 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Vivi1556g00002 367 SMART mt_12 128 158 IPR003690 GO:0003690|GO:0006355
Vivi1556g00002 367 SMART mt_12 295 329 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi1556g00002 mTERF 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1556g00002 K15031 - gmx:102666739 340.117