Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1556g00001 ATGTTTCATATCAGACCTCTTCTACACCTCAACAAACTTTCTTCAACCCCAAAAATAAAATGTTACCTTCATCTTCTCAAACCCCACTCTTTCAACTTCCTCTCCACCACCACCACCACCACCACCATTTCAGATTCAGATAAAAATTCTTTCACCATATCCTACCTCACTAACAATTGTGGTATATCTCCACAAGAAGCTCTCAAAGCATCAAAACGCATCAATTTCAACACCCCCAAAAAACCCAATTTCGTCATCGCCTTCTTCAAAACCCACGGTTTCTCCGATGACCAGATACAATCCATTATATGCAGGAATCCTCAGCTCATCCTCTCCAACCCCATCAAAACTCTTCTCCCAAAGTTTCAATTTTTAGCCTCCAAAGGCGCTTCTCCCACCGACATAGTCGCCACTGTCACCGGAAGCCCCCATTTCCTAAGATCAAGCCTCAAACGCATTATTCAAACTTTTGAATTAGTAAGAAGTTTCTGTCCGTCTGATCAAAAAGCTATTACTTCGATCATTTTCTGTCCATCTTTCGTTTGTGATAGTCGCATGAAACCAAATCCGATCATTTTCTGTCCATCTTTCGTTTGTGATAGTCGCATGAAACCAAATCTTCAATTTTTAATTGATTTCGGTGTAACCCGTTCTTGTATTTACCGTTTGCTTTGTTCTAGACCTTCTGTACTATGTTCTAATGATTTGAGAAAAGCCATTACTTCAATCATTAAGGAATTAGGGTTTCACCCTTCCAAAATCAGTTTTGGTGTTGCATTATTAGCCAAAAGGGCTATCACCAAATCCCAATGGGATGCCAAAGTTGATACCTTGAAGAGCTGGGGTTATTCTGAAGATGCAATTTTTAATGCATTTAAAAGGAACCCTAAGATTATGTTACAGTCTGCGGATAAACTCAACGCGGTCGTGAGTTTTTGGATCAAACAGCTTGAATGGGATCCTTCAGTGCTCTTGGCAGCACCAGATCTATTCAGTTTTAGTCTAGAGAAAAGGCTTGTTCCAAGGGCTTCAGTTGTGTGGTATCTGTTATCCAAAGGTTTGATAAAAAAGAGTGCTAGCTTGTATACACCGTTTAATTTGTCTGATGTGTTGTTCATGAAAAAATATGTGAGTTGTTATGAGGAAGAAGAAGCCTCTAGGCTATTAAGGCTATATCAGGGGAAGGATGCTAGCATATAG 1200 0.3983 MFHIRPLLHLNKLSSTPKIKCYLHLLKPHSFNFLSTTTTTTTISDSDKNSFTISYLTNNCGISPQEALKASKRINFNTPKKPNFVIAFFKTHGFSDDQIQSIICRNPQLILSNPIKTLLPKFQFLASKGASPTDIVATVTGSPHFLRSSLKRIIQTFELVRSFCPSDQKAITSIIFCPSFVCDSRMKPNPIIFCPSFVCDSRMKPNLQFLIDFGVTRSCIYRLLCSRPSVLCSNDLRKAITSIIKELGFHPSKISFGVALLAKRAITKSQWDAKVDTLKSWGYSEDAIFNAFKRNPKIMLQSADKLNAVVSFWIKQLEWDPSVLLAAPDLFSFSLEKRLVPRASVVWYLLSKGLIKKSASLYTPFNLSDVLFMKKYVSCYEEEEASRLLRLYQGKDASI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1556g00001 399 SMART mt_12 321 355 IPR003690 GO:0003690|GO:0006355
Vivi1556g00001 399 SMART mt_12 189 216 IPR003690 GO:0003690|GO:0006355
Vivi1556g00001 399 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Vivi1556g00001 399 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
Vivi1556g00001 399 Gene3D Transcription termination factor 3, mitochondrial 189 385 IPR038538 -
Vivi1556g00001 399 Gene3D Transcription termination factor 3, mitochondrial 49 188 IPR038538 -
Vivi1556g00001 399 PANTHER CGI-12 PROTEIN-RELATED 48 383 IPR003690 GO:0003690|GO:0006355
Vivi1556g00001 399 Pfam mTERF 87 250 IPR003690 GO:0003690|GO:0006355
Vivi1556g00001 399 Pfam mTERF 199 372 IPR003690 GO:0003690|GO:0006355
Vivi1556g00001 399 FunFam Mitochondrial transcription termination factor-like 167 384 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi1556g00001 mTERF 2.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1556g00001 K15031 - gmx:102666739 307.375