Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1555g00002 ATGATTTATGGTAGGTGTGCAGCTTGCAAGAATCAAAGAAGAAGGTGCCCACCTGATTGCATTTTCTCTCCATATTTTCCTCCCAATGATCCTCAAAGATTTGCATTTGTTCATAAAATCTATGGTGGTAGCAATGTTGGAAAAAAACTTCAGCAATTGCCTCATTATGTAAGAGAAGAAGCTGCAAATAATTTATATTTAGAAGCAAAATGTAGAATTCAAGATCCTGTTTATGGATGTGTTGGGATTATTTCTAAATTGTATCAACAAATCCATGATACACAAATTGAGTTGGCCAAAATTCAGACTCAGATTGCTTTTCATAAACTCCAAAATCCACAATTTCAAGCTGAAAAATCAAACTTAAACTTTTTGCCACCTCAGAGTAATAGCATGGAGCAGTTTCAATGGCCTAGTCAAGCTACTAATTGGTTCAATTGA 441 0.3469 MIYGRCAACKNQRRRCPPDCIFSPYFPPNDPQRFAFVHKIYGGSNVGKKLQQLPHYVREEAANNLYLEAKCRIQDPVYGCVGIISKLYQQIHDTQIELAKIQTQIAFHKLQNPQFQAEKSNLNFLPPQSNSMEQFQWPSQATNWFN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1555g00002 146 Coils Coil 84 104 - -
Vivi1555g00002 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Vivi1555g00002 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Vivi1555g00002 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 120 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1555g00002 5 116 AS2 family AT3G26660 64.286 2.13e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi1555g00002 LOB 1.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1555g00002 - - gmx:100790640 216.468