Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1544g00001 ATGTCTCACATAGCTGTTGAGAGGAACAGAAGAAGACAGATGAATGAACATCTCAAGGTTTTAAGGTCCTTGACCCCTTGTTTCTATATTAAAAGGGGAGATCAAGCATCAATAATAGGTGGAGTTATAGAATTCATCAATGAATTGCATCAAGTTCTTCAAGCATTGGAATCTCAAAAGAGAAGGAAGAGTTTAAGCCCTAGCCCTAATCCAAGTCCGAAAACACTGCAACCAACTTTTCATCAATTTGATATCTCATCTGGAGGAATTGAGACTAACAATTCTTTCAAGGAGCTAGGAGCAAGCTGCAATTCTTCAGTTGCAGATGTAGAAGTGAAAATCTCAGGTCCAAATGTGATTTTAAGAGTGATATCTCAAAGAATTCCAGGTCAAGTTTCGAGGATTGTAGCAGTTTTAGAAAGTTTTTCTTTTGAAGTTCTTCATCTTAACATTAGTAGCATGGAAGAAACTGTTCTATACCAATTTGTAGTCAAGATAGAACTGGGATGTCAGCTGAGTTTGGAGGAACTAGCTATGGAAGTTCAACAAAGCTTTTGCTCAGAGGCTATGAAGTTGATTGCAGTGTGA 588 0.3776 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFINELHQVLQALESQKRRKSLSPSPNPSPKTLQPTFHQFDISSGGIETNNSFKELGASCNSSVADVEVKISGPNVILRVISQRIPGQVSRIVAVLESFSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAMKLIAV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1544g00001 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 70 IPR036638 GO:0046983
Vivi1544g00001 195 SMART finulus 4 55 IPR011598 GO:0046983
Vivi1544g00001 195 FunFam Transcription factor MUTE 1 66 - -
Vivi1544g00001 195 PANTHER TRANSCRIPTION FACTOR FAMA 1 185 IPR044283 GO:0003700|GO:0010052
Vivi1544g00001 195 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Vivi1544g00001 195 Gene3D - 1 64 IPR036638 GO:0046983
Vivi1544g00001 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1544g00001 1 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.322 3.33e-83 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1544g00001 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1544g00001 - - gmx:100810771 310.071