Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1531g00001 ATGGCGCCGAAGGTTAAGAGCGGTGACATTAACGTGAAGAGTAACGGAAACGGTAACGGTAACGGTAACTGCAACATTAACGGCGGAGTTGTTAAGGAGCCTCATTTTCGCGGCGTGAGAAAGAGGCCATGGGGAAGATACGCCGCCGAGATCAGAGATCCGGGAAAGAAGAGCCGTGTCTGGCTCGGCACCTTCGACACGGCGGAGGAAGCGGCGAGAGCCTACGACACCGCCGCACGTGAATTCCGTGGTCCGAAGGCCAAAACAAACTTCCCTTACCATACGGAAGCTCTCAAGATCCATAGCCCTAGCCAAAGCAGCACCGTTGAATCCTCAAGCCGCGACCGTGACCGTGACCGTGACGCTGCTGCAGATTCTTCTTCTCCGCTTGACCTCAATTTGGCTCCTCCGATCAAAGGTCCGGTTCGGTTTCCGTTTCAGCATCGGTTTAGTCTGAATCCGATGACGACGGTAAACCAGGCGCAGGCGTTTTACTTTGACGCTAATCTATGCGCCGGGAAGGGTTACGGATTGGAATACTTTCCCTCCGTGAAGGCGAGTGCAATCCACGCGACGACAACCGGTGCACAGAGTGATTCTGATTCTTCATCGGTGATTGATCTGAACCACCGTGAGGACGGTGTAAGAGTAAAATCCGGTAGAGATTTCGGTTTCGATTTCGATCTTAATTTTCCTCCTCCGGAAGATATGCTATAA 717 0.5272 MAPKVKSGDINVKSNGNGNGNGNCNINGGVVKEPHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPYHTEALKIHSPSQSSTVESSSRDRDRDRDAAADSSSPLDLNLAPPIKGPVRFPFQHRFSLNPMTTVNQAQAFYFDANLCAGKGYGLEYFPSVKASAIHATTTGAQSDSDSSSVIDLNHREDGVRVKSGRDFGFDFDLNFPPPEDML 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1531g00001 238 MobiDBLite consensus disorder prediction 96 136 - -
Vivi1531g00001 238 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Vivi1531g00001 238 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Vivi1531g00001 238 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Vivi1531g00001 238 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Vivi1531g00001 238 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Vivi1531g00001 238 MobiDBLite consensus disorder prediction 10 26 - -
Vivi1531g00001 238 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 206 - -
Vivi1531g00001 238 MobiDBLite consensus disorder prediction 1 26 - -
Vivi1531g00001 238 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Vivi1531g00001 238 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Vivi1531g00001 238 MobiDBLite consensus disorder prediction 111 125 - -
Vivi1531g00001 238 CDD AP2 34 94 IPR001471 GO:0003700|GO:0006355
Vivi1531g00001 238 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1531g00001 1 120 AP2-EREBP Transcription Factor Family AT5G44210 56.800 2.30e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1531g00001 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1531g00001 K09286 - gmx:100170742 217.238