Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1526g00005 ATGAGTGTGGTGGGGTTTGACATTGGTAATGAGAACTGTGTCATTGCTGTGGCGAAGCACCGAGGGATTGATGTTTTGTTGAACGATGAATCGAAACGGGAAACCCCGGCTGTTATATGCTTTGGTGAAAAGCAACGGTTTTTGGGGTCGGCTGGGGCGGCTTCTGCTATGATGCACCCTAAATCGACGATATCTCAGATAAAGAGATTTATAGGGAGGAGGTTTAGTGACCCGGATATGGAAAGGGACTTGAAGATGCTTCCTCTGGAAACTTCGGAAGGACCAGATGGTGGTGTTTTGATTCATTTGAAATACTTGCAGAGGGATCAGACGTTTACACCGGTTCAAATAATGTCTATGCTCTTTGCTCACTTGAAGACTATGACAGAAAAAGATTTGGAAGCACCCGTCTCGGATTGTGTTATTGGTATCCCATCGTACTTCACTGACTTGCAGAGACGGGCTTATCTTGATGCGGCAAGAATTGCTGGGTTGAAGCCTTTGAGATTGATCCATGATTGTACTGCAACTGCCCTTAGTTATGGAATTTACAAAACAAATTTTCAAAGTGAAGGATTTACATATGTTGCATTTATTGACATTGGTCAATGCGATACTCAGGTCTGCATTGCAGGGTTTCAGTCTCGGCAAATGAAGGTACTTTCACATACTTTTGACAGGAGTTTAGGTGGGAGGGACTTTGACGAGGTTCTATTTACTCATTTTGCGGAAAAATTCAAGGAACAGTACAGCATTGACGTGTATTCTAATGCCAAGGCATGCCTTAGGCTGCGTGCAGCATGTGAGAAATTGAAGAAAGTTTTGAGTGCAAATCCAGAGGCACCGCTAAATATCGAGTGTTTGATGGATGAGAAAGATGTTAAGGGCTTTATCACAAGAGAAGAATTTGAGAGTCTCGCATCGGGATTGTTGGAGAGAATTTCTAAACCTTGCAGCCAAGCATTACTTGAAGCAGGCTTGAATGCAGAGAAGATTGTTTCTGTAGAACTAGTTGGTTCAGGTTCTAGGATTCCAGCAGTAAGTACATTATTAACTTCTCTATTCAAAAGAGAACCTAGCCGTAAGCTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTCTACAGTGTGCTATGCTCAGTCCCACATACCGTGTGAGAGACTACGAGGTCCAGGATATTAGTCCATTTTCATATGGACTTGCATCAGATGAAGGTCCAATTTCTGTAGGATCAAATGGTGTAATTTTCCCAAAAGGCCAATATATTCCAAGTACTGCAGTTCTACGACTCCAGCGAACTAGTTTTTTCCAGTTGGAAGCTTTCTATCCAAATCAATATGAACTACCACCTGGAACATTTCCCAAAATTAGTTCCTTCATGATTGGTCCTTTGCCTGAATCTCATAGTAGCAACACAACAGTTAAAGTTCGCGTTCAACTAAATCTGCACGGCATTTTCAGTATTGAATCAGCTACATTGATCGTGGATCACGCGGATGATAATCATTCAAATTATGATGCAATGGATGTTGATCATGTGTCTGAGACCTCAGATAGTTCCAATTTTGTTGCCAATGGTGCTGAAGATAGTACCAATAAGTCTGATTCTCCACAAAGCTCTGCTGATTATTCAAGAAAAGATAAAGCTAAAAGAAAGCTTCCTATTCCAGTGAATGAGAATATCTACGGTGGAATGACAATGGCGGAGATTTCTGAAGCCCATGAAAAAGAACTCCAGTTAGCCCAACAGGATAGAGCTGTGGAGCTAACCAAAGAAAAGAAGAACACTTTGGAATCCTATGTCTATGAGACGAGGAGTAAGCTTTTCAATGCATATCGGAGCTTTGCAAGTGATCAAGAGAGGGACGACATATCTAGGAGTTTGCAAGAGACTGAGGATTGGCTTTACGAGGATGGTGACGATGAAACTGAAAACGCTTATACTTCAAAACTAGAAGACCTGAAAAGGCTGGTGGATCCAATTGAGAATCGATACAAAGATGATGAAGAAAGAGCGCAAGCTATAAAAGATTTTTCAGCTCTCGTTTCCGATATTCACCACTTTGCAGGTTCCCTTCCACCCCAAGAGAAAGAACTGGTCATCAATGAGATTAATAAAGCAGTGCAGTGGCTAACAGAGAAAAAGCAACAACAAGATTCTTATCCTAAGAATCGTGACCCAATATTATGGTCGAGTAATATCAAGAGCGTAATAGAGCATCTAAACCAAAGTGTGCATAGGATAGTGAGATCCAGGAGAACTTCAGAAGACAATGACAAATTTTCGGAAGACATTGACGGAGACAAGAGAGATACTTCCAATCATTCATGA 2334 0.416 MSVVGFDIGNENCVIAVAKHRGIDVLLNDESKRETPAVICFGEKQRFLGSAGAASAMMHPKSTISQIKRFIGRRFSDPDMERDLKMLPLETSEGPDGGVLIHLKYLQRDQTFTPVQIMSMLFAHLKTMTEKDLEAPVSDCVIGIPSYFTDLQRRAYLDAARIAGLKPLRLIHDCTATALSYGIYKTNFQSEGFTYVAFIDIGQCDTQVCIAGFQSRQMKVLSHTFDRSLGGRDFDEVLFTHFAEKFKEQYSIDVYSNAKACLRLRAACEKLKKVLSANPEAPLNIECLMDEKDVKGFITREEFESLASGLLERISKPCSQALLEAGLNAEKIVSVELVGSGSRIPAVSTLLTSLFKREPSRKLNASECVARGCALQCAMLSPTYRVRDYEVQDISPFSYGLASDEGPISVGSNGVIFPKGQYIPSTAVLRLQRTSFFQLEAFYPNQYELPPGTFPKISSFMIGPLPESHSSNTTVKVRVQLNLHGIFSIESATLIVDHADDNHSNYDAMDVDHVSETSDSSNFVANGAEDSTNKSDSPQSSADYSRKDKAKRKLPIPVNENIYGGMTMAEISEAHEKELQLAQQDRAVELTKEKKNTLESYVYETRSKLFNAYRSFASDQERDDISRSLQETEDWLYEDGDDETENAYTSKLEDLKRLVDPIENRYKDDEERAQAIKDFSALVSDIHHFAGSLPPQEKELVINEINKAVQWLTEKKQQQDSYPKNRDPILWSSNIKSVIEHLNQSVHRIVRSRRTSEDNDKFSEDIDGDKRDTSNHS 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1526g00005 777 Coils Coil 652 672 - -
Vivi1526g00005 777 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Vivi1526g00005 777 FunFam Heat shock 70 kDa protein 4 566 676 - -
Vivi1526g00005 777 FunFam Heat shock 70 kDa protein 4 1 72 - -
Vivi1526g00005 777 Gene3D - 186 360 - -
Vivi1526g00005 777 FunFam Heat shock 70 kDa protein 4 230 313 - -
Vivi1526g00005 777 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 666 IPR029048 -
Vivi1526g00005 777 PANTHER HSC70CB, ISOFORM G-RELATED 1 754 - -
Vivi1526g00005 777 FunFam Heat shock 70 kDa protein 4 38 113 - -
Vivi1526g00005 777 Pfam Hsp70 protein 3 666 IPR013126 GO:0005524|GO:0140662
Vivi1526g00005 777 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 563 IPR029047 -
Vivi1526g00005 777 MobiDBLite consensus disorder prediction 517 555 - -
Vivi1526g00005 777 Gene3D - 38 113 - -
Vivi1526g00005 777 Gene3D - 5 374 - -
Vivi1526g00005 777 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Vivi1526g00005 777 MobiDBLite consensus disorder prediction 517 540 - -
Vivi1526g00005 777 MobiDBLite consensus disorder prediction 751 777 - -
Vivi1526g00005 777 Gene3D - 566 677 IPR029048 -
Vivi1526g00005 777 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 385 599 IPR029047 -
Vivi1526g00005 777 Gene3D Actin; Chain A, domain 4 230 313 - -
Vivi1526g00005 777 CDD HSPA4_like_NDB 2 381 - -
Vivi1526g00005 777 MobiDBLite consensus disorder prediction 541 555 - -
Vivi1526g00005 777 PRINTS 70kDa heat shock protein signature 140 160 - -
Vivi1526g00005 777 PRINTS 70kDa heat shock protein signature 30 42 - -
Vivi1526g00005 777 PRINTS 70kDa heat shock protein signature 388 407 - -
Vivi1526g00005 777 PRINTS 70kDa heat shock protein signature 2 15 - -
Vivi1526g00005 777 PRINTS 70kDa heat shock protein signature 363 383 - -
Vivi1526g00005 777 PRINTS 70kDa heat shock protein signature 332 348 - -
Vivi1526g00005 777 FunFam Heat shock 70 kDa protein 4 106 191 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1526g00005 4 410 Calmodulin-binding Proteins AT3G09440 33.415 3.70e-74 252