Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1523g00004 ATGGAGACAAAGTTATGTGCTTTTGCTTTTATTTCGGAGGTTTTGTTTTTGTTGCTCCTCAATCCACTATGCTTGATTTCTGCTAACATGGAAGGTGATGCTTTACATAACTTACGGACAAATTTACAAGATCCTAACAATGTTCTGCAGAGTTGGGATCCTACACTTGTTAATCCTTGCACATGGTTTCATGTAACCTGCAACAATGATAATAGTGTCATTAGAGTTGATCTGGGAAATGCTGCTTTATCTGGCACACTTGTTCCACAGCTTGGTCAACTCAAGAATTTGCAGTATCTGGAGCTTTACAGTAATAACATTACCGGTCCTATTCCTAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTGAATCAGTTCACTGGCCCTATCCCAGATTCATTGGGCAAGTTGTCAAAATTGCGTTTTCTCCGGCTTAATAACAACAGCTTGATGGGTCCTATTCCCATGTCACTGACTAATATTTCAGCTCTCCAAGTTCTGGATTTGTCTAATAACCAACTCTCAGGCGTGGTTCCCGATAATGGCTCATTCTCATTATTCACTCCGATCAGTTTTGCAAACAACTTGAATCTATGCGGACCAGTCACTGGGCACCCTTGTCCTGGCTCTCCACCGTTTTCTCCGCCTCCCCCCTTTGTCCCTCCACCCCCAATTTCTGCCCCAGGAAGTGGAGGTGCAACTGGAGCGATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCCGCGCCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTTCCTGCTGAAGAGGATCCTGAAGTTCATCTTGGGCAGCTCAAGAGGTTCTCACTTCGAGAGTTGCAAGTTGCAACCGATACTTTCAGCAATAAAAACATTCTTGGAAGAGGAGGGTTTGGTAAGGTGTACAAAGGACGTTTGGCAGACGGCTCACTGGTTGCTGTTAAAAGATTGAAAGAGGAGCGGACACCTGGCGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATTAGCATGGCTGTGCATAGAAATCTCCTCCGTTTACGTGGGTTTTGCATGACACCAACCGAAAGGTTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCCTCCTGTTTAAGAGAGCGTCCTCCACATCAAGAACCACTAGATTGGCCAACAAGGAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCACGATCATTGTGACCCAAAGATCATTCATCGAGATGTGAAAGCTGCTAACATACTGTTGGATGAGGAGTTTGAGGCTGTTGTCGGGGATTTCGGATTGGCAAAACTTATGGATTATAAGGACACCCATGTGACAACAGCTGTACGTGGTACAATTGGGCATATAGCTCCCGAATACCTATCTACCGGCAAATCTTCAGAGAAAACTGATGTTTTTGGTTATGGTATCATGCTTCTTGAGCTTATCACTGGACAAAGAGCTTTTGACCTTGCCCGGCTTGCAAATGATGACGATGTTATGCTGCTTGATTGGGTAAAAGGACTTCTGAAAGAGAAGAAGCTTGAAATGTTGGTTGATCCCGATCTTCAAACCAACTACATAGAAGCGGAGGTAGAACAGTTAATCCAGGTTGCGTTGCTCTGCACGCAAGGTTCACCCATGGACCGGCCTAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGCGACGGGCTGGCAGAAAGATGGGATGAGTGGCAAAAAGGGGAAGTTCTACGGCAAGAAGTGGAACTGGCACCTCATCCCAATTCTGATTGGATTGTTGACTCTACTGAAAATTTACATGCAGTTGAATTATCTGGTCCAAGGTGA 1884 0.4501 METKLCAFAFISEVLFLLLLNPLCLISANMEGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNQFTGPIPDSLGKLSKLRFLRLNNNSLMGPIPMSLTNISALQVLDLSNNQLSGVVPDNGSFSLFTPISFANNLNLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGSGGATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKGEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1523g00004 627 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vivi1523g00004 627 FunFam Somatic embryogenesis receptor-like kinase 1 381 598 - -
Vivi1523g00004 627 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Vivi1523g00004 627 SUPERFAMILY L domain-like 31 200 - -
Vivi1523g00004 627 Pfam Protein kinase domain 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1523g00004 627 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Vivi1523g00004 627 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vivi1523g00004 627 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Vivi1523g00004 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 589 - -
Vivi1523g00004 627 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Vivi1523g00004 627 SMART serkin_6 304 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1523g00004 627 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Vivi1523g00004 627 ProSiteProfiles Protein kinase domain profile. 304 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1523g00004 627 CDD STK_BAK1_like 310 581 - -
Vivi1523g00004 627 FunFam Somatic embryogenesis receptor kinase 1 27 214 - -
Vivi1523g00004 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1523g00004 1 627 Receptor kinase-like Gene Family AT1G71830 88.836 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi1523g00004 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1523g00004 K13418 - gmx:100789884 1107.43