Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1522g00001 ATGGGTATCAAAGATCTTCTCAGATTCATGAAACCTTACGTTGAACCCATTCACATCAAGAACTACGCTGGCAAACGTGTGGGTATTGATGCATATTCATGGCTTCATAAAGGAGCTTATTCGTGTAGTATGGAACTTTGTCTTGATTCTGATAGTGAAAGGAAATTGCGGTACATTGAATACTTTATGCATAGAGTGAACCTGCTTCGTTACTATAAAGTAACACCGGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAATCTGCAACTGAGAAAGAGAGGAACAAGAAAAGAAATGCTTATCATGATTTGGCAATGGCTAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCAGAGCTTTTTCAGAGAGCAGTGAATATTACTCCTCTTATGGCTCATAAGCTAATTCAGACTTTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACTTGTCCAACCTCGAGACAGAAAAAGGCGGTATCGCAGCGGTGATTACGGAAGATAGTGATCTGATAGCTTATGGTTGTCCAGCTGTTATGTTTAAGATGGACCGTGAAGGGAATGGTGAAAGAATAGAATTAGAGAAGGTTTTTTCCGCCGAATCTTGTAAACCTTCATTTCGGAGTTTTGATATGAAGCTTTTCACAGGTATGTGTGTTTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGCATTGGTGTTGCTCGCGCCCATGCCCTAGTTTCAAAGTATAAGAATATCGATCGTGTCTTGTCTGTTCTTAAGTTTGAGAAAGGCGATCAAATGCCCGAAGATTACGCCAAATCCTTCAAAGACGCACTGGCTGTATTTCAGCATGCTCGGATATATGATATCAATACTAAAGAGCTCAAGCACATGAAGCCTCTTCCAGAAAATTTTCTCGAGTCACTTGACGAAAACCTCGATTTTTTGGGACCCGAAATTCCCTCGACTATAGTCAAAGGAATAGCTGAAGGAAACTTGAATCCATCAACTAAGGAAGCTTTTGATAAGTCTGAAAATTCGAGACTTCCTTTACACCCCATAGATTCTCAAACCATCGGTCAACTCAAAAAACGTGAAGTTTCGATACAGATTAAGCAGGAAAACTGTTTTTCAGTCTTTGGCTCTCAAAACATCAATCATGCAATTACAAGGCTTTCAGATAAAGAAAAATATTCAAATGAAGCATTGGCACTTCAGAAACTAATCATGCCATTAGGAACAAATGAAGCAATGAAAAAAACCATTACATGTGATAAAACTCCATTGAAGGTTCCTAACAACAATCCTTTTAGGATAAGAAAACAAAAGGAGGAGGTAAAAGTTGAAGAAATTTCCATTGTAAGCAGTGTTGAATATATCGGTCTTGACGATTACGTGTCACCGAGTAACTCTCGAGAAAAAGTGTCTAAGAATGAAGAAATTTCTGTTGTCAGCAGTGTGGAATATATTGATCTTGATAACTACTCGTCACCACAAGAAAAAGGGTCTGCAAAATTTGCAAAGAAAAGGAAATTCGAGAATGTTTGCTTAGATAAAGTTGAAGCGAAAGACGAAGAGGTTTCGGGAGTGACTGAAGTGGAATGCTCGAATGCGGAGTCTCAAGAAAGTGTTAAGTCCAAGGTTAAGAAATCGAAGATAAGTAACTCCAAGAAAAAGGGGAGTAACATTAGAACTATTCTGAATTTCTTTTCAAGAGTGTAA 1740 0.3856 MGIKDLLRFMKPYVEPIHIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNLLRYYKVTPVVVFDGGNVPCKSATEKERNKKRNAYHDLAMAKLKEGNVNAASELFQRAVNITPLMAHKLIQTLKSENIEFVVAPYEADAQLAYLSNLETEKGGIAAVITEDSDLIAYGCPAVMFKMDREGNGERIELEKVFSAESCKPSFRSFDMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYKNIDRVLSVLKFEKGDQMPEDYAKSFKDALAVFQHARIYDINTKELKHMKPLPENFLESLDENLDFLGPEIPSTIVKGIAEGNLNPSTKEAFDKSENSRLPLHPIDSQTIGQLKKREVSIQIKQENCFSVFGSQNINHAITRLSDKEKYSNEALALQKLIMPLGTNEAMKKTITCDKTPLKVPNNNPFRIRKQKEEVKVEEISIVSSVEYIGLDDYVSPSNSREKVSKNEEISVVSSVEYIDLDNYSSPQEKGSAKFAKKRKFENVCLDKVEAKDEEVSGVTEVECSNAESQESVKSKVKKSKISNSKKKGSNIRTILNFFSRV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1522g00001 579 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Vivi1522g00001 579 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Vivi1522g00001 579 Gene3D - 218 291 - -
Vivi1522g00001 579 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Vivi1522g00001 579 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Vivi1522g00001 579 FunFam exonuclease 1 218 291 - -
Vivi1522g00001 579 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 561 IPR006084 -
Vivi1522g00001 579 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Vivi1522g00001 579 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Vivi1522g00001 579 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vivi1522g00001 579 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Vivi1522g00001 579 CDD H3TH_FEN1-like 225 295 - -
Vivi1522g00001 579 SMART xpgineu 141 213 IPR006086 GO:0004518
Vivi1522g00001 579 MobiDBLite consensus disorder prediction 544 564 - -
Vivi1522g00001 579 FunFam Exonuclease 1, putative 1 214 - -
Vivi1522g00001 579 Gene3D - 1 213 - -
Vivi1522g00001 579 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Vivi1522g00001 579 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Vivi1522g00001 579 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Vivi1522g00001 579 SMART xpgn3 1 102 IPR006085 GO:0004518
Vivi1522g00001 579 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1522g00001 1 391 Core DNA Replication Machinery Family AT5G26680 23.529 7.88e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1522g00001 K10746 - gmx:100817932 766.533