Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1506g00001 ATGAAGAGATTGAGGTCAAGCGAAGATCTTCACTCGTATAACAACGGTGGTGGCGATAAGAACGGCGATAAGAACGGTGATAAGATTGGTGATAAGAATGGTGATAAGAATGGTTTTAAGGATTCGAATCTGAGCCGTTCGTTTTCTTCTACTGGTCAGAGAAGCTTTTACTACAAACAAGAGAATGTTCGCAAGGGTTTGGTATCTTCGTCTTCGTCGCGATACGAGAGGGATCGGACGGTGGAGGAAGATCGGGAGGGTTCGAGAATTGTTCGGAAACGATCTGACCATGATTTTGATGGTTTTGATCGGAGGAAGGGTTTTGATCGGTATAGCCGGGATGGTGGTGGTTACAGCGGTGGTGGTGGGAGTGGGGATAGGAATTCGATTCACAGGTCGGAGAGTTTCAGTGGACCGAGGAGGGAGTTTCCGAAGGGGTTTCGTTCGGAGAGGGATCGGTCGAGGAGGGAGGGGAGTGTGTCCTCTTGGAGGAGAGGGCTGAAGGATTTTGATGAGAGTAGTAGAGGGAGTGGTAGTAGAGTTGAAGAGAGGGTAGTGCGGTCGCCAAAGGGGGGTTTTTCGAAGGAAGTGAAATCGCCTAGTTGGTCGAAGGATTCGGAGAGTGAACAATCGAAGAAGAGATCTTCTTCTTCTCCAAGGGTGTTTAGAGATGCTAAGTCAGTGTCGAAGTCACCTTCTGGGTCTAAGGATTCGGAAAGCGCACAGTCCAAAAGTGTTAGTGTTGAGGTGAAGAAAACTGAAGAGTTATCGCAGCAGGTTCAGAATGGAAGTGGCAGCGAAATGGAAGAGGGGGAACTCGAACCTGAACCTGTCCCTAACTCTGAGCCCAAATCGGCTGCTAAAGATGTTGCAGCTGGAAGTGAAATCCAGCAAACCTCTGAGGACAAACAAGTTCATAAGCCGAATGAAGGCCGTTTGACTGATGCAGATGTTGTTATGGAAGAAAAACAGATGTTGGCGAGTGAGAAAAAGGCAGAGGCAGAGGCGAACACTATGGAAGATGTTGATTCTGAGGTAAAAGATGCAGAAAAAGAAGTTCATGAATTGCCTAAGACTCAAGATGTTTCAATTAAGGAAACGCCTTTTACTGAGACTGTGATTGGATCTGTTGATAAGGATAATGATAAGGATGCAAGTTTGAATGGTGATGATACTCTCAAGAAAGAAACAAAGAAGAAAACAAATAAGGAGAATGCATTGCTTAATGAAGAGGAACGCGAGGTGGACAAGGGTGTATGTAGTGGTGACAAATCTGAGATAAATGCTGAAGGCTCAACAGAGAATGCAGTTGCCGAAGTGAAGAGAGAAACAATAATGGAGAGTGTGACCAACAATACCAAGGATAAAGGAAAAAGCGTCTCGGTCACACCTGATGTTGCTCATTCTTCACAAGATAGTTTGTGGATTGATAGAGGGTCGAAAGATCTCACAACATGTCCTGTAGATGACATGGAAGGTCCTAGCACTAGAGGGTTCGAGCTTTTCTCTAGATCTCCTGTGAGAAAAGTAGAAAAGTCTTGTCGCTCGGTTCTGAAAGAGGAGAATGATGACACTCTTGCATCTGGGCAGCTTGATCTTACCCTTAGCTTGCCAAATGTTCTGCTTCCGATAGGAGCTCAGGAGACGACAACACAAGCCCCTGGATCTCCTAGTCAAGCCCGGAGTGTTCAGTCACTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCAATGTCATTTTCAGGTTCCCAATCACTATATCACAATCCAAGTTGTTCTCTTACGAGAAATTCAGTGGACTATGAACAATCTGTTGGCAAATCGGTTGGCAGTCGCCCCTTGTTCCAAGGATTTGATTGGCAAGCTCTATCTCAGGGTGATCCCAAGCCGAAAGAAATTCCCTCTGGTCAGAGAACTTCGATGAATGGGAATGGCTCTCTTTACCAGCCTCAAGCATCATGGGGTATTTTAGATACTCAAGCTTTGAAAGGTCAATCTAGGGCTCTGGAAGGAAGCTCAAAAATGGGCAGTGGGCTTGAAAGGCAGTTGAGTTTTCATAAGCAGCTTTCAGGACAGTCAAGACGGCATGATGATGTTCGATCTCCTACACAGAGTGTTGGGTCTCATGACAATGGATCAAATTATAGTTTTGAGAAAAAGAGGGAGGTTAAAGAAAGAAGCAGTGGTAGTCTACATCGAACTACCAGTCAGAAGGGACAAGAACAATTTCAGATGGGTGGACTTGATTTTGTTAAGACAATCATTGCAAGAATAGTTTCTGAACCTGTGCTCCCGATGTCCCGAAAGTTTCATGAAATGAATGCACAGTACATAGCGCGTCTGAAGGAGGGTATTCGAGAACTCATGCTCAATTCAGATAACCAAGGACAAATACTTGCTTTTCAAAAAGTTTTGATGAACAGGTCTGATATAGTCTTGGATGTTCTAGTGAAGTGTCACCGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTAACCCATTATCTTCACCTAGATGATAACATTTCATCTTCTGATTTAGCTCAAGTGTTTCTAAGCTTGAGGTGTCGGAATGTTACATGTCGAAGTCAGTTGCCTGTCGATGAATGTGATTGCAAGGTTTGTGCACAGAAGAATGGTTTTTGCAGGGAATGTATGTGTCTTGTATGTTCTAAGTTTGACAATGCCTCAAACACATGTAGTTGGGTTGGGTGTGATGTTTGTCTTCACTGGTGTCACACTGATTGTGGATTACGAGAATCTTATATTAGAAATGGGCTTACTACTGGAATTAAAGGAACTACTGAGATGCAGTTTCACTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTCTTTCAAAGTTTTGCAAAAGAGTGGTCAGCGGAATCTCTTCACAAGGAGCTTGAATATGTGAAGAGGATCTTTTCTGCTAGCAAGGATATAAGAGGGAGACAGTTGCACGAGATTGCAGATCAAATGCTACCGAGGCTGACTAAGTCGAACCTGCCTGAGGTTTTAAGACACATCATGTCTTTCCTTTCTGATTGTGATTCTTCCAAATTAGCCATGCCAACAAACTTTTCTGGGAAGGAACAAGTCAAAGAAAACAATGGGGTAGCTGGGCCCAGCCAAGAAGCTGCTTGGCTGAAATCTATTTATTCAGAAAAGCCGCCTCTATTATTAGAAAGACCTCCAAACATCCTTCCAAGATTTGACCAGAATGATAAAAGGACACTGGTGCAAGAGATGCAGCTGAGTAGTGTTCAAAAAGACTTCTGTTTTGATGAATTGGAAAGCGTAGTAAAAATCAAACATGCAGAGGCTAAAATGTTTCAATCTCGTGCTGATGATGCAAGGAGAGAAGCCGAAGGGTTGAGACGCATCGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAATATACCAGTCGACTTGCCAAATTACGGTTCTCGGAGACGGATGAATTGCGTAAACAAAAGATAGAAGAACTCCAAGCATTGGAGAGGGCACATCTGGAGTATTTGAACATGAAAAGGAGAATGGAGTCAGAGATTAAAGATCTGTTGTCCAAAATGGAAGCTACTAAAATGAACCTTGCCATGTGA 3636 0.4348 MKRLRSSEDLHSYNNGGGDKNGDKNGDKIGDKNGDKNGFKDSNLSRSFSSTGQRSFYYKQENVRKGLVSSSSSRYERDRTVEEDREGSRIVRKRSDHDFDGFDRRKGFDRYSRDGGGYSGGGGSGDRNSIHRSESFSGPRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESSRGSGSRVEERVVRSPKGGFSKEVKSPSWSKDSESEQSKKRSSSSPRVFRDAKSVSKSPSGSKDSESAQSKSVSVEVKKTEELSQQVQNGSGSEMEEGELEPEPVPNSEPKSAAKDVAAGSEIQQTSEDKQVHKPNEGRLTDADVVMEEKQMLASEKKAEAEANTMEDVDSEVKDAEKEVHELPKTQDVSIKETPFTETVIGSVDKDNDKDASLNGDDTLKKETKKKTNKENALLNEEEREVDKGVCSGDKSEINAEGSTENAVAEVKRETIMESVTNNTKDKGKSVSVTPDVAHSSQDSLWIDRGSKDLTTCPVDDMEGPSTRGFELFSRSPVRKVEKSCRSVLKEENDDTLASGQLDLTLSLPNVLLPIGAQETTTQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTRNSVDYEQSVGKSVGSRPLFQGFDWQALSQGDPKPKEIPSGQRTSMNGNGSLYQPQASWGILDTQALKGQSRALEGSSKMGSGLERQLSFHKQLSGQSRRHDDVRSPTQSVGSHDNGSNYSFEKKREVKERSSGSLHRTTSQKGQEQFQMGGLDFVKTIIARIVSEPVLPMSRKFHEMNAQYIARLKEGIRELMLNSDNQGQILAFQKVLMNRSDIVLDVLVKCHRVQLEILVALKTGLTHYLHLDDNISSSDLAQVFLSLRCRNVTCRSQLPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGLTTGIKGTTEMQFHCIACDHPSEMFGFVKEVFQSFAKEWSAESLHKELEYVKRIFSASKDIRGRQLHEIADQMLPRLTKSNLPEVLRHIMSFLSDCDSSKLAMPTNFSGKEQVKENNGVAGPSQEAAWLKSIYSEKPPLLLERPPNILPRFDQNDKRTLVQEMQLSSVQKDFCFDELESVVKIKHAEAKMFQSRADDARREAEGLRRIALAKNEKIEEEYTSRLAKLRFSETDELRKQKIEELQALERAHLEYLNMKRRMESEIKDLLSKMEATKMNLAM 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 200 220 - -
Vivi1506g00001 1211 Pfam Coiled-coil region of Oberon 1084 1199 IPR032535 -
Vivi1506g00001 1211 Pfam PHD - plant homeodomain finger protein 861 983 IPR032881 -
Vivi1506g00001 1211 Coils Coil 1174 1208 - -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 221 266 - -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 624 650 - -
Vivi1506g00001 1211 Coils Coil 393 414 - -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 300 361 - -
Vivi1506g00001 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1145 1167 IPR004082 -
Vivi1506g00001 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 772 794 IPR004082 -
Vivi1506g00001 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 898 918 IPR004082 -
Vivi1506g00001 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 826 841 IPR004082 -
Vivi1506g00001 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 970 989 IPR004082 -
Vivi1506g00001 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 811 826 IPR004082 -
Vivi1506g00001 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 852 873 IPR004082 -
Vivi1506g00001 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1106 1126 IPR004082 -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 445 469 - -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 21 39 - -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 40 70 - -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 133 191 - -
Vivi1506g00001 1211 Coils Coil 1130 1150 - -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 1 469 - -
Vivi1506g00001 1211 Coils Coil 332 352 - -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 71 112 - -
Vivi1506g00001 1211 CDD PHD_OBE1_like 891 949 IPR047578 -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 717 734 - -
Vivi1506g00001 1211 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1209 IPR004082 -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 689 745 - -
Vivi1506g00001 1211 MobiDBLite consensus disorder prediction 376 423 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1506g00001 861 1008 PHD Gene Family AT5G57380 25.333 5.67e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1506g00001 - - gmx:100817003 1498.41